barSeed - Barley Seed Development Database

Probe CUST_847_PI390587928

Source Contig U35_10890

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_847_PI390587928	Hv_44K_v2	CGTCCTCCGTTCGAGCAACTCCGACAGGCGCCTTAAAAGAAAATTGCAGCGCGGAAAAAA	753	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.206	0.259	0.546	1.726	1.740	1.604
Raw	44.417	82.257	161.625	792.885	281.413	275.061

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372691	1659	3e-22	1595 - 1650	100	56 / 56	plus	ABC07898
MLOC	MLOC_66142.1	1576	3e-22	1407 - 1462	100	56 / 56	plus	ABC07898
MLOC	MLOC_66142.2	1386	3e-22	1331 - 1386	100	56 / 56	plus	ABC07898
JLOC1	JLOC1_43572.1	1413	1e-22	1270 - 1325	100	56 / 56	plus
Harvest35	U35_10890	824	3e-25	754 - 813	100	60 / 60	plus

Contig Sequence (824 bp)

>U35_10890 824 Hv_44K_v2
GACGACAACGGNGTTCCTCGGTAAGTTGCTTCCTATCTGGTTGTCAAGCATAGTGATCGC
CGCGGCCACCTCCCAGGTCTCCACCCTGTTCACCAAGCAGGGCAGCACGATGGACCGGCG
CCTGGGCGCGGCCACGGGCCTCGTCGTGCCGCCCGCGGCGCTGCAGTGCTTCGTCAGCTT
CACCTACATCGCCCTGGTCCCCGTCTACGACCGCGCCCTCGTGCCCCTTGCGAGGCGCCT
CACCAGACACCCCGCGGGGGTCACCATGCTCCAGCGCATCGGCGCTGGGATGGTCATGTC
CTGCGTCACCATGGTCGTCGCGGGGCTCGTGGAAGCCAAGCGCCTCCGAGTGGCCACGGA
CGCCGGTCTGCTCGACCGGCCCGACGTGGCGGTGCCGATGAGCCTGTGGTGGCTGGTGCC
GCAGTACGTCCTGGTTGGCTTCGCGGAGGTGTTCTGCTTCATCGGGCTGGAGGAGTTCTT
CTACGACCAGGTGCCCGACGGGCTCCGCAGCGTGGGGCTGGCCCTGTGCCTGAGCATCTT
CGGCGTGGGGAGCTACGCCAGCGGCATGCTCGTGTGGGCGGTCGACTGGGCCACGACGAG
GGGCGGGGGAGAGAGCTGGTTTGCCGACAACCTCAACCGCGCGCACCTCGATTACTTTTA
CTGGATCCTGGCTGGTCTCAGCGCTTTGCAGGTGGCCGTGTTCCTGTATTTTGCAAACCG
GTATGTGTACCGGAAGAAACCCGAGCAATGATTCGTCCTCCGTTCGAGCAACTCCGACAG
GCGCCTTAAAAGAAAATTGCAGCGCGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_10890 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65150.1	538	2e-119	protein\|proton-dependent oligopeptide transport, putative, expressed
Brachypodium v1_2	Bradi2g56380.1	540	2e-132
Arabidopsis v10	AT1G22540.1	557	4e-88	Major facilitator superfamily protein \| chr1:7964202-7966222 FORWARD LENGTH=557