barSeed - Barley Seed Development Database

Probe ABC07412

Source Contig ABC07412

barSeed

Links

Affymetrix Source Sequence (1609 bp)

>ABC07412 1609
ACCTCCTTTCCTTCCTTCCCCATCCCCTCCCCAGTCCTCTGCCGCCGCCACCTTCTTTCT
CCACTAAATCCACCCCATCCTCATCATCCTCGTCCACGACCGTCGACTGAAGGAACCAAA
GCAGGTGAGGGGGTGGCTCTAGGAGTTGGCGGTGGCTCCAGGGCCGTCGAGAGGCGTTGG
GTCTAAGACTTCGTGCCTCGGCGGCCGGGGTCAAGCAAGTCAGATGGGAGCCTTCCACCA
GCACATTTCTCATGTCCAGGGAGGTCTCCTTTTCGCCGAGCTCCAGATCCATGACAACGG
GTGAGCAGCGGCAAAGGCTACCACCTAGCAACTCCACTTCCCTTGTCTTTCACCCTCTCC
AACCCGTCTGGAGGTATGCCCACTCTTCTTCTCTTCTCTTCTTTGATACAGCAACGTTGA
TAAACACAAATCTGGAGATAGTAGTTAAGTTTTTTCTTTTATTCTGTATTGCCTCTCCGT
TCTACAAAATTGCAAAATGTGTTTCTTTTGGAAGCAATATTTTGATCTTATATCAATTTA
TTAGATAGGCTACATGGGGATCTTTTGCTCTGACTAGAGTTGATGATTTGTCTTAGGATA
CACTTGATGATTTAGTTGGAGATGAATGGTTCTTACTAAGATACATCTGTATATGTATGT
GCTTTATTTGCTTCGGTTGAAGATATATGTGTGCCTTAGGGATATATCTAAAGTCAAATT
TACAGGTACATATCCCGTCAGTGATTATGTATTAATGATTGTTGGCAACTCCTATCTTAC
TAACGACTCCCCTTGTAGGTAAAATCTGATCAAAACTACTAGACGATCCAAGTGGACAAT
TATTTCACTTTCAGCTTGTATATCACTGTCCGACCACAGAAGGTTAGATGTCTATATTAC
ATCCAAAAAGTTGGATGCCAACTATTTACAACACGCCTCTCACAAAAAAGTATAAATGGA
TTGGTAACTTAGTCATGGGATTGGTGAGTTTAGTTCGCCATCTCTTGAATTGGGTGAATT
TCATCACAAGAAAGAAGAAGGAATTGGTAATATTAAATTGGGTGTTATATGATTCCTTAG
CTGACATCCTTTTGTTCTTTCTTGTGACTTTTGGAGTTATTGAACTTGGTCTTTGTTGTA
AGTGAATGTCTTCCCGCGTCCGAAGCCTCGGTGTGGCGTGACCTCTAGGACGTTCCGACG
GCATCGGATCCAGCGATTGTGGCCTACGATGGCTTTGTCGCCTTTGGCCGCCTCTATGCT
GCTGCCGACAAGATCAGCGGGAGGTTCTCGTGGCCACCAACGTCCTGGCCGAGGCCTATG
CTGTCACCAACGACCTCGTCATCCAGGTCAAGCAGCACCCGGCACAACGCACTTCCCCCC
TGTCTCGGTCTGCTATTTACGGCGGCCCTAGGCGCTTAGATCTCTGGGCGTACGAGCTCG
TTATTGGCCACACAAAGACTGTAAGCTATGTTGAGGATGTAGATGCATCGACCATTGTAT
CTGGTTCCACCGACAACTCGTTGAACTTTTGGGACTTGTCTATGAATCAAGCAAGAGTAA
TTGACAATCCAATTCAGGGTTTTACATGGCATAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_6719.1	2396	0.0	754 - 2350	99	1596 / 1597	CUST_25572_PI390587928	ABC07411 ABC07412
MLOC_6716.1	1346	0.0	936 - 1309	100	374 / 374	CUST_25572_PI390587928	ABC07412
MLOC_6716.2	1315	0.0	1 - 393	100	393 / 393	None	ABC07412
MLOC_6719.3	1277	0.0	867 - 1243	99	376 / 377	CUST_25572_PI390587928	ABC07412
MLOC_6716.3	1530	0.0	1 - 719	100	719 / 719	CUST_25572_PI390587928	ABC07412
MLOC_6719.2	1253	0.0	1 - 413	100	413 / 413	None	ABC07412
MLOC_14686.2	1930	0.0	1 - 571	98	557 / 571	None	ABC07412
MLOC_14687.4	1449	0.0	1 - 571	98	557 / 571	None	ABC07412
MLOC_14687.1	1492	0.0	86 - 642	98	544 / 557	None	ABC07412
MLOC_14687.2	1804	0.0	86 - 642	98	544 / 557	None	ABC07412
MLOC_14687.3	1556	0.0	86 - 642	98	544 / 557	None	ABC07412
MLOC_14687.5	1983	0.0	1 - 545	98	533 / 545	None	ABC07412
MLOC_6716.4	864	0.0	1 - 371	100	371 / 371	None	ABC07412
MLOC_14687.7	2089	9e-176	11 - 366	98	349 / 356	None	ABC07412
MLOC_14686.4	2090	9e-176	11 - 366	98	349 / 356	None	ABC07412
MLOC_14686.1	993	8e-57	87 - 219	97	129 / 133	None	ABC07412
MLOC_14687.6	2378	9e-176	24 - 379	98	349 / 356	None	ABC07412
MLOC_14686.3	1826	9e-176	24 - 379	98	349 / 356	CUST_15344_PI390587928	ABC07412
MLOC_14687.8	2063	9e-176	11 - 366	98	349 / 356	None	ABC07412
MLOC_50751.1	524	4e-80	1 - 178	97	173 / 178	None	ABC07412
MLOC_50751.2	197	4e-80	5 - 197	95	184 / 194	None	ABC07412
MLOC_63920.1	3577	8e-52	672 - 825	91	140 / 154	CUST_17062_PI390587928 CUST_25574_PI390587928	ABC07411 ABC07412
MLOC_63920.2	3421	8e-52	512 - 665	91	140 / 154	CUST_17062_PI390587928	ABC07411 ABC07412
MLOC_63920.3	1274	8e-52	497 - 650	91	140 / 154	CUST_17062_PI390587928	ABC07411 ABC07412