barSeed - Barley Seed Development Database

Probe CUST_25572_PI390587928

Source Contig U35_17292

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25572_PI390587928	Hv_44K_v2	TTTGGAGTTATTGAACTTGGTCTTTGTTGTAAGTGAATGTCTTCCCGCGTCCGAAGCCTC	1109	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.154	1.627	2.024	1.650	0.453	0.747
Raw	21.965	51.785	52.469	73.490	5.338	11.410

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6719.1	2396	2e-24	1182 - 1241	100	60 / 60	minus	ABC07411 ABC07412
MLOC	MLOC_6716.1	1346	2e-24	364 - 423	100	60 / 60	minus	ABC07412
MLOC	MLOC_6716.3	1530	2e-24	347 - 406	100	60 / 60	minus	ABC07412
MLOC	MLOC_6719.3	1277	2e-24	384 - 443	100	60 / 60	minus	ABC07412
JLOC1	JLOC1_4389.7	1449	8e-25	726 - 785	100	60 / 60	plus
JLOC1	JLOC1_4389.6	1801	8e-25	1078 - 1137	100	60 / 60	plus
JLOC1	JLOC1_4389.3	1641	8e-25	918 - 977	100	60 / 60	plus
JLOC1	JLOC1_4389.1	1551	8e-25	828 - 887	100	60 / 60	plus
Harvest21	ABC07412	1609	3e-25	1110 - 1169	100	60 / 60	plus	ABC07412
Harvest35	U35_17292	1609	3e-25	1110 - 1169	100	60 / 60	plus

Contig Sequence (1609 bp)

>U35_17292 1609 Hv_44K_v2
ACCTCCTTTCCTTCCTTCCCCATCCCCTCCCCAGTCCTCTGCCGCCGCCACCTTCTTTCT
CCACTAAATCCACCCCATCCTCATCATCCTCGTCCACGACCGTCGACTGAAGGAACCAAA
GCAGGTGAGGGGGTGGCTCTAGGAGTTGGCGGTGGCTCCAGGGCCGTCGAGAGGCGTTGG
GTCTAAGACTTCGTGCCTCGGCGGCCGGGGTCAAGCAAGTCAGATGGGAGCCTTCCACCA
GCACATTTCTCATGTCCAGGGAGGTCTCCTTTTCGCCGAGCTCCAGATCCATGACAACGG
GTGAGCAGCGGCAAAGGCTACCACCTAGCAACTCCACTTCCCTTGTCTTTCACCCTCTCC
AACCCGTCTGGAGGTATGCCCACTCTTCTTCTCTTCTCTTCTTTGATACAGCAACGTTGA
TAAACACAAATCTGGAGATAGTAGTTAAGTTTTTTCTTTTATTCTGTATTGCCTCTCCGT
TCTACAAAATTGCAAAATGTGTTTCTTTTGGAAGCAATATTTTGATCTTATATCAATTTA
TTAGATAGGCTACATGGGGATCTTTTGCTCTGACTAGAGTTGATGATTTGTCTTAGGATA
CACTTGATGATTTAGTTGGAGATGAATGGTTCTTACTAAGATACATCTGTATATGTATGT
GCTTTATTTGCTTCGGTTGAAGATATATGTGTGCCTTAGGGATATATCTAAAGTCAAATT
TACAGGTACATATCCCGTCAGTGATTATGTATTAATGATTGTTGGCAACTCCTATCTTAC
TAACGACTCCCCTTGTAGGTAAAATCTGATCAAAACTACTAGACGATCCAAGTGGACAAT
TATTTCACTTTCAGCTTGTATATCACTGTCCGACCACAGAAGGTTAGATGTCTATATTAC
ATCCAAAAAGTTGGATGCCAACTATTTACAACACGCCTCTCACAAAAAAGTATAAATGGA
TTGGTAACTTAGTCATGGGATTGGTGAGTTTAGTTCGCCATCTCTTGAATTGGGTGAATT
TCATCACAAGAAAGAAGAAGGAATTGGTAATATTAAATTGGGTGTTATATGATTCCTTAG
CTGACATCCTTTTGTTCTTTCTTGTGACTTTTGGAGTTATTGAACTTGGTCTTTGTTGTA
AGTGAATGTCTTCCCGCGTCCGAAGCCTCGGTGTGGCGTGACCTCTAGGACGTTCCGACG
GCATCGGATCCAGCGATTGTGGCCTACGATGGCTTTGTCGCCTTTGGCCGCCTCTATGCT
GCTGCCGACAAGATCAGCGGGAGGTTCTCGTGGCCACCAACGTCCTGGCCGAGGCCTATG
CTGTCACCAACGACCTCGTCATCCAGGTCAAGCAGCACCCGGCACAACGCACTTCCCCCC
TGTCTCGGTCTGCTATTTACGGCGGCCCTAGGCGCTTAGATCTCTGGGCGTACGAGCTCG
TTATTGGCCACACAAAGACTGTAAGCTATGTTGAGGATGTAGATGCATCGACCATTGTAT
CTGGTTCCACCGACAACTCGTTGAACTTTTGGGACTTGTCTATGAATCAAGCAAGAGTAA
TTGACAATCCAATTCAGGGTTTTACATGGCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_17292 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None