barSeed - Barley Seed Development Database

Probe ABC07090

Source Contig ABC07090

barSeed

Links

Affymetrix Source Sequence (2255 bp)

>ABC07090 2255
TAAACCCTAGCCGCCGGCGACATCGCCCGCCGTCCTCCTCTTCCGCGCTCGCTCACTCAC
TCACTCAGTGTTAACACACACACCATGGCTTCACCGTTCGGGGGCGCCTCCACATGCGGC
ATCAACGCCACCGTCCCAACCGGGTTCGCGGCCAAGAAGCAGCTCTCCCTCGTTTCGCCC
CCGTCAGTTTCGCTGCCGCAGAGAATCAGGCCAGGCAGGAAGTGCAGTTTCCGAGCGAAC
GCCGCAAAGGAGCTCTACTTCAACAAGGACGGCTCGGCTATCAAGAAGCTGCAAACTGGG
GTAAACAAGCTTGCTGATCTCGTCGGGGTTACTCTTGGCCCAAAAGGAAGGAATGTTGTC
CTTGAGAGCAAGTACGGGTCTCCTAGGATTGTCAATGATGGCGTTACCGTGGCAAAAGAG
GTTGAGCTGGAGGACCCTGTTGAAAATATTGGAGCTAAATTGGTCAGGCAAGCTGCTGCT
AAGACCAATGATTTGGCTGGTGATGGGACTACCACTTCTGTCATCCTTGCCCAAGGGATG
ATTGCCGAGGGTGTTAAGATTGTAGCTGCCGGTGCTAATCCAGTACAGATTGCCCGTGGT
ATTGAGAAAACAACCAAAGCACTAGTCGGTGAGCTCCGAAAGATGTCCAAGGAGGTTGAA
GATAGCGAACTTGCTGATGTTGCTGCAGTAAGCGCTGGAAATAACTACGAAATTGGTAAC
ATGATAGCTGATGCTATGAGCAAGGTTGGGCGACAGGGGGTGGTTACACTTGAAGAAGGC
AAGAGTGCCGAAAACAACCTCTATGTGGTTGAAGGGATGCAATTCGACCGCGGCTATATT
TCTCCCTACTTTGTAACCGACAGTGAAAAAATGTCAGTGGAGTATGAGAATTGCAAGCTG
CTTCTTGTGGACAAGAAAATTAACAACGCCAGAGATCTCATCACTCTTCTCGAGGACGCT
ATTAAGGGTGGATATCCAATTTTAATAATCGCAGAGGATATTGAGCAGGAAGCTCTTGCA
ACTCTTGTGGTCAATAGGCTTAGAGGTGCACTGAAGATTGCTGCTATTAAAGCCCCTGGT
TTTGGAGAGCGCAAGAGTCAATACCTGGATGATATCGCAACTCTGACGGGAGGCACTGTC
ATCCGAGAAGAAATAGGGCTCTCCCTGGACAAAGCAGACAAAGAAGTCCTTGGAAATGCC
GCCAAGGTTGTAATTACTAAGGATTCCACAACAATTGTTGGAGATGGTACTACACAGGAG
GAAGTAACCAAAAGGGTTACACAAATCAGGAACCAAATTGAGGCTTCTGAACAAGAATAT
GAAAAAGAAAAGCTAAACGAGAGGATAGCTAAACTATCTGGTGGTGTTGCTGTCATTCAG
GTAGGAGCACAGACTGAAACTGAGCTCAAGGAAAAGAAACTGAGGGTTGAAGACGCGCTG
AATGCAACAAAGGCCGCTGTGGAGGAAGGTATTGTTGTCGGTGGTGGATGTACCCTTCTA
AGGCTTGCATCAAAAGTTGATGCCATTAAAGAAACCCTTGAGAATGATGAACAAAAGGTT
GGCGCTGAAATTGTTAGGAAATCCTTGAGTTATCCACTTAAACTGATTGCGAAAAACGCT
GGTGTTAATGGCAGCGTGGTCACTGAGAAGGTCCTTGTGAACGACAACTTCAGGTACGGC
TACAATGCCGCTACAGGGAAGTATGAGGATTTGATGGCTGCTGGTATTATTGATCCCACA
AAGGTTGTGAGGTGCTGCTTGGAGCATGCCGCATCGGTGGCCAAGACATTCATCACCTCT
GACGCCGTCGTGGTGGACATCAAGGAATCTGAGCAGGCACCTGCCGCAAATCCAATGGCC
GGTTCAGGTTACGGGTTCTAATATACGAGAATATCCAGCTCTGTTTTGGTGTCCCTTTGG
TGCATATTGCGTCGGAGGTTATACTTTGAGAAAAGAAGCGTGGATGCTATTGTGTCGCGG
GTCAAAACCGGAAACCATTTTGTTGTGCTATTGTCGCGAACCAAATGTCGGAACGTGAGT
CTTCTTTACAATTTCACACTAGAATCTAGTCTTGAAAGAAAGTGAGCACTTTTTTTTGCG
AAAAAGTCAACACTGTATTGTAGGTATAGTTAATTTATAGGTGATGTCACCACCAAATTA
ATTTGTTTCTGAGTCTTGTGGTAATGCTGGCTGTTGTTGCATAATGCGGAACGGTGATTG
AAACTGCTTTTTTTATTTTAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK250175.1	2216	0.0	18 - 2216	99	2187 / 2204	None	ABC07090
MLOC_50049.1	1888	0.0	1 - 1739	99	1730 / 1744	None	ABC07090
MLOC_50049.2	1892	0.0	1 - 1743	99	1730 / 1748	None	ABC07090
AK376710	2172	0.0	79 - 1885	86	1554 / 1812	None	ABC07090
MLOC_1411.2	1310	0.0	72 - 1310	85	1056 / 1241	None	ABC07090
MLOC_1411.1	1387	0.0	168 - 1386	85	1039 / 1221	None	ABC07090
MLOC_57334.1	2166	0.0	247 - 1864	79	1283 / 1619	CUST_7476_PI390587928	ABC00807 ABC07090 ABC38468 ABC40556
MLOC_57334.2	1760	0.0	1 - 1497	79	1182 / 1498	None	ABC00807 ABC07090
MLOC_46482.1	404	0.0	3 - 404	97	391 / 402	None	ABC07090
MLOC_50601.1	582	2e-148	1 - 302	98	297 / 302	CUST_37407_PI390587928	ABC07090
MLOC_35198.1	238	3e-102	6 - 238	96	223 / 233	None	ABC07090
MLOC_27266.1	156	2e-64	1 - 156	96	149 / 156	None	ABC07090
MLOC_47597.1	457	3e-53	264 - 457	87	168 / 194	None	ABC07090