barSeed - Barley Seed Development Database

Probe CUST_37407_PI390587928

Source Contig U35_2860

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37407_PI390587928	Hv_44K_v2	TTGTTTCTGAGTCTTGTGGTAATGCTGGCTGTTGTTGCATATATGCGGAACGGTGATTGG	2191	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.360	1.464	1.071	0.860	0.369	0.468
Raw	3570.160	5934.217	3902.417	4936.773	736.417	1012.131

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50601.1	582	2e-24	224 - 283	100	60 / 60	plus	ABC07090
JLOC1	JLOC1_32291.1	416	8e-25	224 - 283	100	60 / 60	plus
Harvest21	ABC07091	634	3e-25	38 - 97	100	60 / 60	minus
Harvest21	ABC07090	2255	2e-22	2163 - 2220	98	58 / 59	plus	ABC07090
Harvest35	U35_2860	2288	3e-25	2192 - 2251	100	60 / 60	plus

Contig Sequence (2288 bp)

>U35_2860 2288 Hv_44K_v2
GAGAGATCGGACGGTAAACCACCGCTAAACCCTAGCCGCCGGCGACATCGCCCGCCGTCC
TCCTCTTCCGCGCTCGCTCACTCACTCACTCAGACAGTGTTAACACACACACCATGGCTT
CACCGTTCGGGGGCGCCTCCACATGCGGCATCAACGCCACCGTCCCAACCGGGTTCGCGG
CCAAGAAGCAGCTCTCCCTCGTTTCGCCCCCGTCAGTTTCGCTGCCGCAGAGAATCAGGC
CAGGCAGGAAGTGCAGTTTCCGAGCGAACGCCGCAAAGGAGCTCTACTTCAACAAGGACG
GCTCGGCTATCAAGAAGCTGCAAACTGGGGTAAACAAGCTTGCTGATCTCGTCGGGGTTA
CTCTTGGCCCAAAAGGAAGGAATGTTGTCCTTGAGAGCAAGTACGGGTCTCCTAGGATTG
TCAATGATGGCGTTACCGTGGCAAAAGAGGTTGAGCTGGAGGACCCTGTTGAAAATATTG
GAGCTAAATTGGTCAGGCAAGCTGCTGCTAAGACCAATGATTTGGCTGGTGATGGGACTA
CCACTTCTGTCATCCTTGCCCAAGGGATGATTGCCGAGGGTGTTAAGATTGTAGCTGCCG
GTGCTAATCCAGTACAGATTGCCCGTGGTATTGAGAAAACAACCAAAGCACTAGTCGGTG
AGCTCCGAAAGATGTCCAAGGAGGTTGAAGATAGCGAACTTGCTGATGTTGCTGCAGTAA
GCGCTGGAAATAACTACGAAATTGGTAACATGATAGCTGATGCTATGAGCAAGGTTGGGC
GACAGGGGGTGGTTACACTTGAAGAAGGCAAGAGTGCCGAAAACAACCTCTATGTGGTTG
AAGGGATGCAATTCGACCGCGGCTATATTTCTCCCTACTTTGTAACCGACAGTGAAAAAA
TGTCAGTGGAGTATGAGAATTGCAAGCTGCTTCTTGTGGACAAGAAAATTAACAACGCCA
GAGATCTCATCACTCTTCTCGAGGACGCTATTAAGGGTGGATATCCAATTTTAATAATCG
CAGAGGATATTGAGCAGGAAGCTCTTGCAACTCTTGTGGTCAATAGGCTTAGAGGTGCAC
TGAAGATTGCTGCTATTAAAGCCCCTGGTTTTGGAGAGCGCAAGAGTCAATACCTGGATG
ATATCGCAACTCTGACGGGAGGCACTGTCATCCGAGAAGAAATAGGGCTCTCCCTGGACA
AAGCAGACAAAGAAGTCCTTGGAAATGCCGCCAAGGTTGTAATTACTAAGGATTCCACAA
CAATTGTTGGAGATGGTACTACACAGGAGGAAGTAACCAAAAGGGTTACACAAATCAGGA
ACCAAATTGAGGCTTCTGAACAAGAATATGAAAAAGAAAAGCTAAACGAGAGGATAGCTA
AACTATCTGGTGGTGTTGCTGTCATTCAGGTAGGAGCACAGACTGAAACTGAGCTCAAGG
AAAAGAAACTGAGGGTTGAAGACGCGCTGAATGCAACAAAGGCCGCTGTGGAGGAAGGTA
TTGTTGTCGGTGGTGGATGTACCCTTCTAAGGCTTGCATCAAAAGTTGATGCCATTAAAG
AAACCCTTGAGAATGATGAACAAAAGGTTGGCGCTGAAATTGTTAGGAAATCCTTGAGTT
ATCCACTTAAACTGATTGCGAAAAACGCTGGTGTTAATGGCAGCGTGGTCACTGAGAAGG
TCCTTGTGAACGACAACTTCAGGTACGGCTACAATGCCGCTACAGGGAAGTATGAGGATT
TGATGGCTGCTGGTATTATTGATCCCACAAAGGTTGTGAGGTGCTGCTTGGAGCATGCCG
CATCGGTGGCCAAGACATTCATCACCTCTGACGCCGTCGTGGTGGACATCAAGGAATCTG
AGCAGGCACCTGCCGCAAATCCAATGGCCGGTTCAGGTTACGGGTTCTAATATACGAGAA
TATCCAGCTCTGTTTTGGTGTCCCTTTGGTGCATATTGCGTCGGAGGTTATACTTTGAGA
AAAGAAGCGTGGATGCTATTGTGTCGCGGGTCAAAACCGGAAACTATTTTGTTGTGCTAT
TGTCGCGAACCAAATGTCGGAACGTGAGTCTTCTTTACAATTTCACACTAGAATCTAGTC
TTGAAAGAAAGTGAGCACTTTTTTTTGCGAAAAAGTCAACACTGTATTGTAGGTATAGGT
AATTTATTGGTGATGTCACCACCAAATTAATTTGTTTCTGAGTCTTGTGGTAATGCTGGC
TGTTGTTGCATATATGCGGAACGGTGATTGGGACTGCTCTTTATTTTTTCTAAAAAAAAA
AAAAAAAA

Homology of Contig U35_2860 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g01280.1	599	protein\|T-complex protein, putative, expressed
Brachypodium v1_2	Bradi3g00480.3	599
Arabidopsis v10	AT3G13470.1	596	TCP-1/cpn60 chaperonin family protein \| chr3:4389685-4392624 FORWARD LENGTH=596