barSeed - Barley Seed Development Database

Probe ABC06958

Source Contig ABC06958

barSeed

Links

Affymetrix Source Sequence (2318 bp)

>ABC06958 2318
CCCCCATCAGGCCATCACCCAGACGGCTAAAAACACCATGGCCTCGCATCACGGCGGCCA
CATCCCCTCCTACCTCGCCCCCGCCGCCGCCCTCCTCTTTGCCTTCATAATCGCGTTTCC
AGCATCCGGTGACCCCCTCCAACAGTTCTGCGGCAGCAGTGGCAACTTCACCGCGAACAG
CACCTACCAGGCCAACATCCGGCGCCTCTCCGCAACCCTCCCCAAGAACACCTCCTCCTC
ACCGACGCTCTTCGCCACCGACACCTTCGGAACCCTCCCGGACATCGTCTACGCGCTCGC
GTTCTGCCGCGGGGACACCAGCGCGGCCAACTGCAGCGAATGCGTTGCCACGGCCTTCCT
GGACGCGCAGCAGCGCTGCCCGTACAACCAGGATGCCACCATCTTCTACGACCCCTGCGC
ACTCCGCTTCTCCAACCAGAACTTCCTATCCTCCACCAATGGCGACAACAGATTATTCAT
CCTTCTGAACACCCAGAACATGTCCGTACCGGCCAAGGTGTTCGACACCGCCGTGGGCGT
CCTCGTGAACGCCACCGCCGATTACGCGGCTGCGAATTCCTCCAGGAGGTTCGGCACTGG
AGAGGCGGNGTTCGAGACGGTCGACGAGGCTAATCCAAAGATTTACGGTCTGGCGCAGTG
CACGCCGGACATGGCACCGGCCGATTGCCGGACCTGCCTCCAGGGTATCATCGCGATGAT
GGCGCAATACTTCAGTGGGAGGAAGGGTGGCCGGATTCAACAATTGCGGTGCAATTACAG
GTATGAGCTGTATCGCTTCTTCAATGGGCCTTCCCTGCTGCAGCTCCGGGCGCCATCCGT
GGGGTTGGCTCCAGCTCCAGCGCCGGCGAACGTGAAGCCACCGCTAGCCGGAGGAGGAAG
CACAGGGAACGGAACAGCTAGAATTTTAGCTATTACACTGCCGATAGTTGCTGCAGTACT
GGCTGCTGTTGTAATTTGCCTTTATCTATGGAGAAGGAAGAGCACACCCGCGCGAAAGAC
ATCACTATCGTATCCAACCATTCCAGAGGACATACAGAGCATTGATTCACTCATTCTCGA
TCTATCAACTCTACGAGTCGCAACAGATAACTTTGATGAAAGGAATAAACTTGGTGAAGG
AGGGTTTGGTGTGGTTTATAAGGGAATCCTTCCTGACAATGAAGAAATTGCAGTTAAAAG
GCTCTCTCAAAGTTCTCGCCAAGGGATAGAGGAGCTGAAAAATGAGCTTGTTTTGGTTGC
TAAGCTTCAACACAAGAATTTAGTGAGACTTCTTGGTGTTTGCTTGGAGGAACAAGAAAA
GTTACTTGCGTATGAATACATGCCCAACAAAAGCCTTGACACCATTCTTTTTGATCCTGA
TAGGAGCAGTCAGCTAGATTGGGGGATGAGATTTAGGATAGTCAATGGAATTGCTCGAGG
CTTACAATATCTTCATGAAGATTCTCAGCTGAAGATAATTCACCGGGACCTCAAAGCGAG
CAACGTTCTTTTAGACTCTGACTTTAATCCTAAGATTTCAGATTTTGGCTTAGCAAGGCT
ATTTGGAAGTGACCAATCCCATGATGTCACCAACCGTGTCGTCGGAACCTACGGATACAT
GGCCCCCGAGTATGCTATGCGTGGGAGTTACTCTATCAAGTCGGACGTATTCAGCTTCGG
CGTCTTGATTTTGGAGATCGTTACTGGAAAAAGAAACAGCGTCGCATATGATTCCGAGCA
AGCTGTAGATCTCTTAAGTTTGGTCTGGGAGCACTGGACGATGGGAACAATTGTAGAGAT
CATGGATTCGTCCATGACTAGCCATTCTCCTGGAGACCAGATGCTGAAGTGCATGCACAT
CGGACTTCTGTGTGTTCAAGAAGACCCAGCTGATAGACCGATGATGTCGGTTGTGACTGT
CATGCTAAGCAGCAGCACTGTGTCTCTCCAAGCTCCATCCAGGCCAGCATTTTGCATCCA
AAAGAGTGACATGAACTACTCAGGCATGCACACGGATCCATATCCAGGAGTTTCACACTC
TACCAGCAGATCACCTATGTCACCAAACGAAGTTTCGATTACTGAACTTGAGCCGAGATA
AGTCTGAGACTGATGATGTATTCATTATATATGCCATTCTTGCCAAAATAACCTATTTTG
ATGCAGGGAAAGACCCTACGTCATATGTATAATAAACTCGGCCCCCTTGGTGGTAGAAAT
TTTACTGAACAATGGCATAATACGCCAAGTGTAATTGTATTGTTTGGGTTTTCTATTTAT
TGGATTACCGAAAAAGGCTTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK374914	2268	0.0	1 - 2268	99	2266 / 2269	CUST_7877_PI390587928	ABC06958 ABC49629
AK363696	2591	0.0	65 - 2285	87	1939 / 2233	CUST_7880_PI390587928 CUST_7879_PI390587928 CUST_1381_PI390587928	ABC06958 ABC49629
AK356189	2355	0.0	268 - 1972	90	1545 / 1710	CUST_7879_PI390587928 CUST_7880_PI390587928	ABC06958 ABC49629
MLOC_74066.1	1412	0.0	259 - 1412	99	1139 / 1154	None	ABC06958
MLOC_21698.1	1540	0.0	331 - 1534	94	1136 / 1208	CUST_7880_PI390587928	ABC06958 ABC49629
MLOC_48176.1	762	0.0	1 - 762	99	756 / 762	None	ABC06958 ABC49629
MLOC_43406.1	554	0.0	1 - 554	97	537 / 554	None	ABC06958 ABC49629
MLOC_24586.1	185	3e-87	1 - 185	98	183 / 186	CUST_7877_PI390587928	ABC06958
AK365477	2239	1e-80	114 - 656	77	432 / 561	CUST_23983_PI390587928	ABC06958
MLOC_69387.1	2354	1e-80	1515 - 2057	77	432 / 561	None	ABC06958
MLOC_57743.1	301	4e-76	7 - 254	88	218 / 248	None	ABC06958