barSeed - Barley Seed Development Database

Probe CUST_7879_PI390587928

Source Contig U35_16302

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7879_PI390587928	Hv_44K_v2	ATTTGCTTTTGTCTATGGAGGAGGAAGAGCAAACCGGCGGCACTAAAGGCATCATTATCA	402	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.432	3.435	1.992	0.888	0.558	0.494
Raw	34.960	61.019	37.207	24.745	4.876	4.708

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363696	2591	2e-24	1014 - 1073	100	60 / 60	plus	ABC06958 ABC49629
MLOC	AK356189	2355	2e-24	701 - 760	100	60 / 60	plus	ABC06958 ABC49629
MLOC	MLOC_60954.1	1252	2e-24	54 - 113	100	60 / 60	minus	None
JLOC1	JLOC1_39782.1	1144	8e-25	1021 - 1080	100	60 / 60	plus
Harvest21	ABC26941	713	3e-25	278 - 337	100	60 / 60	plus
Harvest35	U35_16302	964	3e-25	403 - 462	100	60 / 60	plus

Contig Sequence (964 bp)

>U35_16302 964 Hv_44K_v2
GCGAACTCATCCAGGCGATTCGGCACAGGGGAGAAGGGGTTCGAGACGATCGACAAGGGG
AAACCGAAGATTTACGGTGTGGCGCAGTGCAGGCCAGACATGGCACCGACCGATTGCCGG
AGCTGCCTCGGAAATATCATCGCGGACATGCCCCAGTACCTAAGCGGGAGGCAGGGTGGT
AGAATTCTTGGATTGCAGTGCAACTACAGGTACGAGCAGTATCCCTTCTTCACCGGGCCT
TCTCTGCTGCAGCTCCCGGCACCATCCGTGGGGGAAGCTCCATCTCCAGCGCCGGACAAC
GTGACGCCACCACCAGTCAGAGGAGGAGGCACAAGGAATGGAACTTTTAGAATTTTAGCC
ATTGCACTACCGATAATCGTTGCAATACTGGCTGCTGTTGTAATTTGCTTTTGTCTATGG
AGGAGGAAGAGCAAACCGGCGGCACTAAAGGCATCATTATCATATCCAAAAAATCCAGAG
GACATACAGAGTATCGATTCACTCATTCTTGATCTATCAACTCTACGAGCCGCAACAGAT
AATTTTGATGAAAGCAATAAACTTGGTGAAGGAGGGTTTGGTGTGGTTTATAAGGGAATC
CTTCCTAACAATGAAGAAATAGCAGTTAAAAGACTCTCACAAAGTTCTGGCCAAGGGATA
GAGGAGCTAAAAAATGAGCTTGTTTTGGTTGCTAAGCTTCAACACAAGAATTTAGTGAGA
CTTCTTGGTGTTTGCTTGGAGGAACAAGAAAAGTTACTTGCATATGAGTACATGCCCAAC
AAAAGCCTCGACACCATCCTTTTTGATCCTGATAGGAGCAGTCAGCTAGATTGGGGGAAG
AGATTTAGGATAGTGAATGGGATTGCTCGTGGCTTACAATACCTTCATGAAGATTCTCAG
CTGAAGATAATTCACCGGGACCTCAAAGCGAGCAACGTTCTTTTAGACTCTGACTTTTAT
CCTA

Homology of Contig U35_16302 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35290.1	680	3e-126	protein\|TKL_IRAK_DUF26-lc.10 - DUF26 kinases have homology to DUF26 containing loci, expressed
Brachypodium v1_2	Bradi1g25647.1	688	3e-166
Arabidopsis v10	AT4G23180.1	669	5e-78	\| Symbols: CRK10, RLK4 \| cysteine-rich RLK (RECEPTOR-like protein kinase) 10 \| chr4:12138171-12140780 FORWARD LENGTH=669