barSeed - Barley Seed Development Database

Probe ABC06920

Source Contig ABC06920

barSeed

Links

Affymetrix Source Sequence (2980 bp)

>ABC06920 2980
GGTTTCCGCGGAATCCTGGACTCCAAAATCCGAGCCGCTCCTCCTCGTTTTGGCCCCCAC
TGCAATGCGCTGCATGCCCCAGCCGATCCCTCTATTTAAACCAGGGCCTCCTCGCCTTCT
CTCTGACTCCATCCCAGCCCCTTCTGCCACAGCGCAGTGCGAGCGGCAGCAGACCTTTGT
TTGGTACTTCCACCTCAGCTTTTGTCCGGCCGGTCCTCTTCCGCCGGCCGGCCCTGCGTC
GCCTAGCTAGGCCATATAAGGAGAACTGAAGGAGGCCTCCAAGGCATTCGGAGGCGTCCA
GCTTGAGCATCAGCAGCAGGTGACCGACCAGAAATGTCGCTGCAAGTCGAGGACCCGCGG
AGCGCAGAGACGCCCGCGCCGCTCAAGCGCCACGACTCGCTGTTCGGCGACGCGGAGAAG
GTCTCCGACTCAAAGCACCATGGCTCTCAGGTGAGCTGGATGCGGACGCTGAGCTTGGCT
TTCCAGAGCGTTGGCATCATCTACGGCGACATCGGGACGTCGCCGCTCTACGTCTACTCC
AGTACCTTCCCGGATGGCATCAGGAACAGGGACGACCTCCTGGGCGTCCTCTCGCTCATC
CTCTACACCCTCATCATCATACCCATGCTCAAGTACGTCTTTATCGTGCTCTACGCCAAC
GACAATGGAGATGGTGGCACGTTTGCGCTCTACTCGCTGATATCTCGGTACGCAAAGATC
AGGCTGATCCCTGATCAACAGGCAGAGGATGCGGCGGTGTCCAATTACCATATAGAGGCA
CCAAACTCGCAGCTCAAGAGGGCGCAATGGTTGAAGCAGAAGCTTGAGTCAAGCAAGGCA
GCCAAGATTGTGCTCTTCACCCTCACCATCCTCGGCACATCAATGGTGATAGGCGATGGA
ACCTTGACCCCAGCAATTTCTGTGCTGTCTGCAGTGAGTGGGATCAGAGAAAAGGCGCCA
AGCTTGACTCAGACACAAGTGGTCCTCATCTCGGTGGCGATTCTGTTCATGCTCTTCTCG
GTCCAGCGTTTTGGGACCGACAAGGTCGGGTACACCTTCGCGCCGGTCATCTCAGTGTGG
TTCCTTCTAATTGCCAGCATCGGGATGTACAACCTGGTTGTTCACGACATCGGTGTCCTG
CGGGCCTTCAATCCGATGTATATAGTGCAATACTTCATAAGGAATGGGAAGAGTGGATGG
GTCTCACTTGGTGGGATTATCTTGTGTGTCACAGGCACAGAAGGTATGTTTGCTGACCTA
GGACATTTCAACATCAGGGCTGTTCAGCTCAGCTTCAACGGCATCCTGTTCCCATCGGTG
GCATTGTGTTATATTGGGCAGGCGGCTTACCTGAGGAAATTCCCAGACAATGTTGCAAAC
ACCTTCTATAGATCCATCCCAGCACCAATGTTCTGGCCAACCTTCATCGTCGCCATTCTT
GCTGCCATCATAGCAAGCCAAGCTATGCTCTCCGGTGCGTTTGCCATCCTCTCCAAGGCC
CTGTCCCTCGGTTGCATGCCAAGGGTTCGAGTGATCCACACCTCGCACAAGTACGAGGGG
CAGGTGTACATCCCTGAAGTGAACTTCCTCATGGGATTGGCGAGCATCGTCGTCACGGTC
GCCTTCCGGACGACCACCAGCATCGGCCATGCTTACGGGATCTGCGTGGTGACCACGTTT
GCGATCACCACCCACCTGATGACCGTCGTCATGCTGCTGATATGGAAGAAGCACGTCATG
TTCATCATGCTCTTCTACGTGGTGTTCGGGTCCATAGAGCTGATCTACCTCTCGTCCATA
ATGTCCAAGTTCATCGAAGGCGGGTACCTCCCCATCTGCTTCGCGCTGGTGGTGATGAGC
CTGATGGCGGCGTGGCACTACGTCCAGGTGAAGAGGTACTGGTACGAGCTGGACCACATC
GTGCCCATCAGCGAGATGACGATGCTGCTGGAGAAGAACGAGGTGCGGCGGATCCCCGGG
GTGGGCCTCCTGTACACGGAGCTGGTCCAGGGCATCCCGCCGGTGTTCCCCCGGCTGATC
CAGAAGATACCGTCCGTGCACTCCATCTTCATCTTCATGTCCATCAAGCACCTGCCCATC
TCGCGCGTGGTGCCCACGGAGAGGTTCATCTTCCGGCAGGTCGGGCCGAGGGAGCACCGG
ATGTTCCGGTGCGTGGCGCGGTACGGGTACAGCGACACGCTGGAGGAGCCCAAGGAGTTC
GCGGCCTTCCTCGTGGACAGGCTCAAGATGTTCATCCAAGAAGAGAGCGCGTTCGCGCTC
GTGCAGGACCAAGAGGAGAGCGGCGGCGCCGGCGATGTTTCGGACGCCCTGGCGAGGCCG
AGGCGATCCACGGTGCACAGCGAGGAGGCGGTCCAAGGCCAAGCGCGGGTGAGCAGCCAC
TCAGCCTCAGGGAGGATGAGCTTCCATACGAGCCTGGCGGTGGAGGAGGAGAAGCAGCTG
ATTGACAGAGAGGTGGAGCGAGGGATGGTGTATCTGATGGGGGAGGCCAATGTGACGGCG
GAGGCCAAGTCCTCCATCTTGAAGAAGATCGTGGTGAACCATGTCTACACGTTCTTGAGG
AAGAACTTGACGGAGGGGCACAAGGTGCTGGCCATTCCCAAAGATCAGCTGCTCAAAGTC
GGGATCACATACGAGATATAGTCATCGATATCGATCGATCGATCGAGTTCATGTTCACCC
CAAGCATGCATGTGATGTGATGGTTCTGGTGCATGGCGTTGATTTGGGAGGGCAAAGTGC
CATTGTCGATTCAATAAGGAGACATGCAGATCAGGTGCAGGCAGGTTGGGTAGGGAGGGG
TGTTCTTTCTTTTGGTTGCAAGGTTTTAATGCATTTTCCACTTTCTCTGTATGTACATCT
AAATGTGTTAAATGTAAGGTCCATATTGCAACTCAAGTTTGAATGTATCCTCCCAGGCAT
AAGCAAGGCTCATATCTTTTTTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_71693.1	3010	0.0	6 - 2968	99	2961 / 2963	CUST_10358_PI390587928	ABC06920 ABC26667
MLOC_71693.2	1015	0.0	1 - 1015	99	1014 / 1015	None	ABC06920 ABC26667
MLOC_15580.1	1643	0.0	103 - 1347	84	1067 / 1268	CUST_24018_PI390587928	ABC06920
MLOC_17989.1	1274	0.0	2 - 999	88	875 / 999	CUST_18900_PI390587928	ABC06920 ABC26667
AK376447	2512	0.0	185 - 2059	77	1458 / 1889	None	ABC06920
MLOC_15580.2	1500	3e-63	1 - 190	90	171 / 190	CUST_24018_PI390587928	ABC06920
AK366974	2739	2e-109	1459 - 1719	94	246 / 261	None	ABC06920 ABC26667
MLOC_65119.3	2246	5e-111	1053 - 1316	94	250 / 265	None	ABC06920 ABC26667
MLOC_65119.4	4066	5e-111	2334 - 2597	94	250 / 265	None	ABC06920 ABC22923 ABC26667
MLOC_65119.9	2985	1e-111	1148 - 1412	94	251 / 266	CUST_10375_PI390587928	ABC06920 ABC26667
MLOC_65119.19	2839	5e-111	862 - 1125	94	250 / 265	None	ABC06920 ABC26667
MLOC_65119.20	2029	1e-111	881 - 1145	94	251 / 266	CUST_10375_PI390587928	ABC06920 ABC26667
MLOC_65119.12	4338	1e-111	2425 - 2689	94	251 / 266	CUST_10375_PI390587928	ABC06920 ABC22923 ABC26667
MLOC_65119.22	2852	1e-111	939 - 1203	94	251 / 266	CUST_10375_PI390587928	ABC06920 ABC26667
MLOC_65119.15	1374	1e-111	1089 - 1350	95	248 / 262	CUST_10375_PI390587928	ABC06920 ABC26667
AK373660	2647	5e-111	1592 - 1855	94	250 / 265	None	ABC06920 ABC26667
MLOC_65119.11	2804	5e-111	892 - 1155	94	250 / 265	None	ABC06920 ABC26667
MLOC_65119.21	2352	5e-111	691 - 954	94	250 / 265	None	ABC06920 ABC26667
MLOC_65119.16	3679	1e-111	2495 - 2756	95	248 / 262	CUST_10375_PI390587928	ABC06920 ABC22923 ABC26667
MLOC_65119.5	1499	5e-111	927 - 1187	95	247 / 261	None	ABC06920 ABC26667
MLOC_65119.6	2935	5e-111	2454 - 2714	95	247 / 261	None	ABC06920 ABC22923 ABC26667
MLOC_65119.7	3650	5e-111	2173 - 2433	95	247 / 261	None	ABC06920 ABC22923 ABC26667
MLOC_65119.8	2907	1e-111	1347 - 1611	94	251 / 266	CUST_10375_PI390587928	ABC06920 ABC26667
MLOC_65119.18	2436	5e-111	736 - 999	94	250 / 265	None	ABC06920 ABC26667
MLOC_65119.17	2057	5e-111	1051 - 1314	94	250 / 265	None	ABC06920 ABC26667
MLOC_65119.14	2560	1e-111	1252 - 1516	94	251 / 266	CUST_10375_PI390587928	ABC06920 ABC26667
MLOC_65119.13	1988	1e-111	1254 - 1518	94	251 / 266	CUST_10375_PI390587928	ABC06920 ABC26667
MLOC_65119.10	4458	1e-111	2545 - 2809	94	251 / 266	CUST_10375_PI390587928	ABC06920 ABC22923 ABC26667
MLOC_65119.1	4189	5e-111	2210 - 2473	94	250 / 265	None	ABC06920 ABC22923 ABC26667
MLOC_65119.2	3034	1e-111	1305 - 1569	94	251 / 266	CUST_10375_PI390587928	ABC06920 ABC26667
MLOC_65683.1	1083	4e-137	195 - 1083	77	689 / 896	None	ABC06920
MLOC_65119.24	1556	1e-112	107 - 370	95	250 / 264	CUST_10375_PI390587928	ABC06920 ABC26667
MLOC_65119.25	1594	1e-111	92 - 353	95	248 / 262	CUST_10375_PI390587928	ABC06920 ABC26667
MLOC_65119.23	2367	1e-111	491 - 755	94	251 / 266	CUST_10375_PI390587928	ABC06920 ABC26667