barSeed - Barley Seed Development Database

Probe CUST_10358_PI390587928

Source Contig U35_15780

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10358_PI390587928	Hv_44K_v2	CTCAAGTTTGAATGTATCCTCCCAGGCATAAGCAAGGCTCATATCTTTTTTCCCAAAAAA	2911	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.041	4.532	1.413	0.610	0.242	0.167
Raw	191.403	291.373	74.461	54.281	6.076	4.116

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71693.1	3010	9e-22	3 - 57	100	55 / 55	minus	ABC06920 ABC26667
JLOC1	JLOC1_47664.1	3153	5e-22	3000 - 3054	100	55 / 55	plus
Harvest21	ABC06920	2980	6e-22	2912 - 2971	97	58 / 60	plus	ABC06920
Harvest35	U35_15780	2983	3e-25	2912 - 2971	100	60 / 60	plus

Contig Sequence (2983 bp)

>U35_15780 2983 Hv_44K_v2
GGTTTCCGCGGAATCCTGGACTCCAAAATCCGAGCCGCTCCTCCTCGTTTTGGCCCCCAC
TGCAATGCGCTGCATGCCCCAGCCGATCCCTCTATTTAAACCAGGGCCTCCTCGCCTTCT
CTCTGACTCCATCCCAGCCCCTTCTGCCACAGCGCAGTGCGAGCGGCAGCAGACCTTTGT
TTGGTACTTCCACCTCAGCTTTTGTCCGGCCGGTCCTCTTCCGCCGGCCGGCCCTGCGTC
GCCTAGCTAGGCCATATAAGGAGAACTGAAGGAGGCCTCCAAGGCATTCGGAGGCGTCCA
GCTTGAGCATCAGCAGCAGGTGACCGACCAGAAATGTCGCTGCAAGTCGAGGACCCGCGG
AGCGCAGAGACGCCCGCGCCGCTCAAGCGCCACGACTCGCTGTTCGGCGACGCGGAGAAG
GTCTCCGACTCAAAGCACCATGGCTCTCAGGTGAGCTGGATGCGGACGCTGAGCTTGGCT
TTCCAGAGCGTTGGCATCATCTACGGCGACATCGGGACGTCGCCGCTCTACGTCTACTCC
AGTACCTTCCCGGATGGCATCAGGAACAGGGACGACCTCCTGGGCGTCCTCTCGCTCATC
CTCTACACCCTCATCATCATACCCATGCTCAAGTACGTCTTTATCGTGCTCTACGCCAAC
GACAATGGAGATGGTGGCACGTTTGCGCTCTACTCGCTGATATCTCGGTACGCAAAGATC
AGGCTGATCCCTGATCAACAGGCAGAGGATGCGGCGGTGTCCAATTACCATATAGAGGCA
CCAAACTCGCAGCTCAAGAGGGCGCAATGGTTGAAGCAGAAGCTTGAGTCAAGCAAGGCA
GCCAAGATTGTGCTCTTCACCCTCACCATCCTCGGCACATCAATGGTGATAGGCGATGGA
ACCTTGACCCCAGCAATTTCTGTGCTGTCTGCAGTGAGTGGGATCAGAGAAAAGGCGCCA
AGCTTGACTCAGACACAAGTGGTCCTCATCTCGGTGGCGATTCTGTTCATGCTCTTCTCG
GTCCAGCGTTTTGGGACCGACAAGGTCGGGTACACCTTCGCGCCGGTCATCTCAGTGTGG
TTCCTTCTAATTGCCAGCATCGGGATGTACAACCTGGTTGTTCACGACATCGGTGTCCTG
CGGGCCTTCAATCCGATGTATATAGTGCAATACTTCATAAGGAATGGGAAGAGTGGATGG
GTCTCACTTGGTGGGATTATCTTGTGTGTCACAGGCACAGAAGGTATGTTTGCTGACCTA
GGACATTTCAACATCAGGGCTGTTCAGCTCAGCTTCAACGGCATCCTGTTCCCATCGGTG
GCATTGTGTTATATTGGGCAGGCGGCTTACCTGAGGAAATTCCCAGACAATGTTGCAAAC
ACCTTCTATAGATCCATCCCAGCACCAATGTTCTGGCCAACCTTCATCGTCGCCATTCTT
GCTGCCATCATAGCAAGCCAAGCTATGCTCTCCGGTGCGTTTGCCATCCTCTCCAAGGCC
CTGTCCCTCGGTTGCATGCCAAGGGTTCGAGTGATCCACACCTCGCACAAGTACGAGGGG
CAGGTGTACATCCCTGAAGTGAACTTCCTCATGGGATTGGCGAGCATCGTCGTCACGGTC
GCCTTCCGGACGACCACCAGCATCGGCCATGCTTACGGGATCTGCGTGGTGACCACGTTT
GCGATCACCACCCACCTGATGACCGTCGTCATGCTGCTGATATGGAAGAAGCACGTCATG
TTCATCATGCTCTTCTACGTGGTGTTCGGGTCCATAGAGCTGATCTACCTCTCGTCCATA
ATGTCCAAGTTCATCGAAGGCGGGTACCTCCCCATCTGCTTCGCGCTGGTGGTGATGAGC
CTGATGGCGGCGTGGCACTACGTCCAGGTGAAGAGGTACTGGTACGAGCTGGACCACATC
GTGCCCATCAGCGAGATGACGATGCTGCTGGAGAAGAACGAGGTGCGGCGGATCCCCGGG
GTGGGCCTCCTGTACACGGAGCTGGTCCAGGGCATCCCGCCGGTGTTCCCCCGGCTGATC
CAGAAGATACCGTCCGTGCACTCCATCTTCATCTTCATGTCCATCAAGCACCTGCCCATC
TCGCGCGTGGTGCCCACGGAGAGGTTCATCTTCCGGCAGGTCGGGCCGAGGGAGCACCGG
ATGTTCCGGTGCGTGGCGCGGTACGGGTACAGCGACACGCTGGAGGAGCCCAAGGAGTTC
GCGGCCTTCCTCGTGGACAGGCTCAAGATGTTCATCCAAGAAGAGAGCGCGTTCGCGCTC
GTGCAGGACCAAGAGGAGAGCGGCGGCGCCGGCGATGTTTCGGACGCCCTGGCGAGGCCG
AGGCGATCCACGGTGCACAGCGAGGAGGCGGTCCAAGGCCAAGCGCGGGTGAGCAGCCAC
TCAGCCTCAGGGAGGATGAGCTTCCATACGAGCCTGGCGGTGGAGGAGGAGAAGCAGCTG
ATTGACAGAGAGGTGGAGCGAGGGATGGTGTATCTGATGGGGGAGGCCAATGTGACGGCG
GAGGCCAAGTCCTCCATCTTGAAGAAGATCGTGGTGAACCATGTCTACACGTTCTTGAGG
AAGAACTTGACGGAGGGGCACAAGGTGCTGGCCATTCCCAAAGATCAGCTGCTCAAAGTC
GGGATCACATACGAGATATAGTCATCGATATCGATCGATCGATCGAGTTCATGTTCACCC
CAAGCATGCATGTGATGTGATGGTTCTGGTGCATGGCGTTGATTTGGGAGGGCAAAGTGC
CATTGTCGATTCAATAAGGAGACATGCAGATCAGGTGCAGGCAGGTTGGGTAGGGAGGGG
TGTTCTTTCTTTTGGTTGCAAGGTTTTAATGCATTTTCCACTTTCTCTGTATGTACATCT
AAATGTGTTAAATGTAAGGTCCATATTGCAACTCAAGTTTGAATGTATCCTCCCAGGCAT
AAGCAAGGCTCATATCTTTTTTCCCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15780 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g32920.4	793	protein\|potassium transporter, putative, expressed
Brachypodium v1_2	Bradi5g08520.1	676
Arabidopsis v10	AT4G13420.1	785	\| Symbols: HAK5, ATHAK5 \| high affinity K+ transporter 5 \| chr4:7797038-7802174 REVERSE LENGTH=785