barSeed - Barley Seed Development Database

Probe ABC06761

Source Contig ABC06761

barSeed

Links

Affymetrix Source Sequence (1800 bp)

>ABC06761 1800
GGACACTACCACCCGGGCTGCCCGGGCTGCGACCACGACCGGACCAAGGAGCTCCAGACC
GGGCTGCCCTACAAGGAATTCGCCTACGTCTGGATGATCTGTCTCACCACCGCTTTACCA
ATATCGTCATTGTTCCCCTTCTTGTATTTCATGATAAGAGACTTGCATGTTGCAAAAAGA
ACAGAAGATATAGGGTTCTATGCTGGTTTTGTAGGTGCTTCTTTTATGTTTGGTAGATGT
TTGACTTCAACTCTTTGGGGAATAGCAGCAGATCGTATTGGGAGGAAGCCTGTTGTTGTG
TTTGGCATTCTCTCTGTGGTGATATTTAATACTTTGTTTGGGCTTAGTGTCACCTATTGG
ATGGCAATAGCTACAAGGTTTCTCCTTGGCGCTTTAAATGGCTTACTTGGACCAATGAAG
GCTTATGCTATTGAAGTTTGCCGACCTGAACATGAACCTCTAGCACTATCACTTGTCAGC
ACGGCATGGGGTATAGGTCTCATCATTGGTCCTGCTCTTGGAGGCTACCTTGCACTGCCT
GCAGAAAAATACCCAAATATATTTTCGCCTGACTCATTGTTTGGAAGGTTCCCGTACTTC
TTACCATGCTTATGCACATCAGTCTTTGCTGCCATTGTTCTGATAAGCTGCATATGGATG
CCGGAGACGTTACACAAGCATAAGGTCAGTGATGATGGAAATCAAAGCGTTGAAGCTTTG
GAGGCCCATCTGATTGATCCAAAAGAGGAGGTTGGACAAAGTAATAGTTCGAATACCAAG
AAGAGCTTATTCAAGAATTGGCCATTGATGTCATCTATAATTGTTTATTGCATATTCTCC
TTCCACGACATGGCTTATACAGAGGTGTTCTCTCTGTGGGCTGAAAGTGACAGAAAGTAT
GGTGGACTGAGTTTATCATCTGAAGATGTAGGTCAGACACTTGCAATTACAGGTGCCAGT
CTTCTTGTGTATCAACTATTTATGTATCCATCCATCATTAAAGTTCTTGGACCTATCAAA
TCTTCTCAGATTGCAGCTGTTCTGTGCATACCTATTCTCTTTGCTTACCCCTACATGACG
TACCTGTCAGGACCTGGATTATCGATCGTACTGAATATTGCATCAGTAATAAAAAATAAT
CTTGGTGTTACCATCATCACAGGCACTTTCATCCTTCAAAACAATGCCGTGCCCCAGAAC
CAAAGAGGAGCAGCAAATGGATTAGCCATGACTGGAATGTCCTTTTTCAAGGCAGTTGCC
CCTGCAGGCGCCGGCATTGTGTTCTCGTGGGCGCAGAAACGCCAACATGCTTTCTTCTTT
CCAGGTGACCAGATGGTGTTCTTTCTGCTGAACATCATCGAGCTCCTTGGACTTGTCCTC
ACATTCAGACCCTTCCTGGCCGTGCCAGAGCAGTATGAAAGAAACTAGTCTTCCCGCGTG
TAATTATTATAGAATGTTTTGGATTATTACTGAGACGATGACGACTCATGCGGCCCCGCA
GCCGCGAGGAAAAGGGCTCAAGGGTGCCCTTGCACCAGGACAAGAGGTGATGACTTGTAC
TTGTGTGTAACATATATATGTTGTAGCAGCACCTCAGAATGGAGGTGGTGCATATATATA
CATGCTGTCTGGTATATAAATGGTGGCCAGTTAAGTTGGTTGTTTGCCATTAGTTAGGTA
GCAGCAACATTTGTAAAACTACTATACAATGCAAGAGACTGTACTAGCTGGGAAGAAATA
ATCTGGTGGAAATTAATGGCATCGGCATAGTTCTTGTCCAAAAAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK363165	1850	0.0	92 - 1850	100	1759 / 1759	CUST_1871_PI390587928	ABC06761
AK371064	1932	0.0	308 - 1932	100	1625 / 1625	CUST_1871_PI390587928	ABC06761
MLOC_43329.5	1648	0.0	1 - 911	99	907 / 911	CUST_1871_PI390587928	ABC06761
AK249921.1	1876	0.0	281 - 1739	87	1283 / 1476	CUST_842_PI390587928	ABC06761
MLOC_43329.6	1248	0.0	1 - 784	99	782 / 784	CUST_1871_PI390587928	ABC06761
MLOC_23045.1	723	0.0	1 - 723	99	721 / 723	CUST_1872_PI390587928	ABC06761
MLOC_23045.2	821	0.0	1 - 611	99	610 / 611	None	ABC06761
MLOC_43329.2	2327	0.0	4 - 421	99	414 / 418	None	ABC06761
MLOC_43329.4	522	0.0	1 - 494	99	490 / 494	CUST_1871_PI390587928	ABC06761
MLOC_43329.3	1288	0.0	4 - 421	99	414 / 418	None	ABC06761
MLOC_68162.2	891	0.0	4 - 560	92	512 / 557	None	ABC06761
MLOC_43329.1	1514	1e-55	518 - 636	100	119 / 119	None	ABC06761
MLOC_68162.1	976	4e-75	440 - 650	91	192 / 211	None	ABC06761
MLOC_43329.7	2420	3e-51	1003 - 1113	100	111 / 111	None	ABC06761