barSeed - Barley Seed Development Database

Probe CUST_1872_PI390587928

Source Contig U35_2794

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1872_PI390587928	Hv_44K_v2	TGTACTAGCTGGGAAGAAATAATCTGGTGGAAATTAATGGCATCGGCATAGTTCTTGTCC	1845	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.614	4.148	1.089	0.841	0.492	0.595
Raw	281.021	501.115	114.705	140.647	28.653	38.501

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23045.1	723	7e-23	1 - 57	100	57 / 57	minus	ABC06761
JLOC1	JLOC1_15935.1	858	8e-25	672 - 731	100	60 / 60	plus
Harvest21	ABC06761	1800	3e-25	1720 - 1779	100	60 / 60	plus	ABC06761
Harvest35	U35_2794	1926	3e-25	1846 - 1905	100	60 / 60	plus

Contig Sequence (1926 bp)

>U35_2794 1926 Hv_44K_v2
GGCTGCAGGCCCTAGTTCACAGAGACCACAGCCGCAGCCGTAAATATGGAGGAGCAAAAC
CGCAATGGGCGGGCCGCGGCGGCGGCAGAGTCGTCGGTGCCCTTGCTGGAGAAGAAGGCC
GGCGCCGTGTCGTACGTGGATGGGTGCCCCGGCTGCGCGGTGGACCGGAGGAAGGCGGCG
AACCCGGGCATCCCCTACGGCACCTTCATCTACGTCTGGACCGTCACCCTCTGCACCGCT
TTACCAATATCGTCATTGTTCCCCTTCTTGTATTTCATGATAAGAGACTTGCATGTTGCA
AAAAGAACAGAAGATATAGGGTTCTATGCTGGTTTTGTAGGTGCTTCTTTTATGTTTGGT
AGATGTTTGACTTCAACTCTTTGGGGAATAGCAGCAGATCGTATTGGGAGGAAGCCTGTT
GTTGTGTTTGGCATTCTCTCTGTGGTGATATTTAATACTTTGTTTGGGCTTAGTGTCACC
TATTGGATGGCAATAGCTACAAGGTTTCTCCTTGGCGCTTTAAATGGCTTACTTGGACCA
ATGAAGGCTTATGCTATTGAAGTTTGCCGACCTGAACATGAACCTCTAGCACTATCACTT
GTCAGCACGGCATGGGGTATAGGTCTCATCATTGGTCCTGCTCTTGGAGGCTACCTTGCA
CTGCCTGCAGAAAAATACCCAAATATATTTTCGCCTGACTCATTGTTTGGAAGGTTCCCG
TACTTCTTACCATGCTTATGCACATCAGTCTTTGCTGCCATTGTTCTGATAAGCTGCATA
TGGATGCCGGAGACGTTACACAAGCATAAGGTCAGTGATGATGGAAATCAAAGCGTTGAA
GCTTTGGAGGCCCATCTGATTGATCCAAAAGAGGAGGTTGGACAAAGTAATAGTTCGAAT
ACCAAGAAGAGCTTATTCAAGAATTGGCCATTGATGTCATCTATAATTGTTTATTGCATA
TTCTCCTTCCACGACATGGCTTATACAGAGGTGTTCTCTCTGTGGGCTGAAAGTGACAGA
AAGTATGGTGGACTGAGTTTATCATCTGAAGATGTAGGTCAGACACTTGCAATTACAGGT
GCCAGTCTTCTTGTGTATCAACTATTTATGTATCCATCCATCATTAAAGTTCTTGGACCT
ATCAAATCTTCTCAGATTGCAGCTGTTCTGTGCATACCTATTCTCTTTGCTTACCCCTAC
ATGACGTACCTGTCAGGACCTGGATTATCGATCGTACTGAATATTGCATCAGTAATAAAA
AATAATCTTGGTGTTACCATCATCACAGGCACTTTCATCCTTCAAAACAATGCCGTGCCC
CAGAACCAAAGAGGAGCAGCAAATGGATTAGCCATGACTGGAATGTCCTTTTTCAAGGCA
GTTGCCCCTGCAGGCGCCGGCATTGTGTTCTCGTGGGCGCAGAAACGCCAACATGCTTTC
TTCTTTCCAGGTGACCAGATGGTGTTCTTTCTGCTGAACATCATCGAGCTCCTTGGACTT
GTCCTCACATTCAGACCCTTCCTGGCCGTGCCAGAGCAGTATGAAAGAAACTAGTCTTCC
CGCGTGTAATTATTATAGAATGTTTTGGATTATTACTGAGACGATGACGACTCATGCGGC
CCCGCAGCCGCGAGGAAAAGGGCTCAAGGGTGCCCTTGCACCAGGACAAGAGGTGATGAC
TTGTACTTGTGTGTAACATATATATGTTGTAGCAGCACCTCAGAATGGAGGTGGTGCATA
TATATACATGCTGTCTGGTATATAAATGGTGGCCAGTTAAGTTGGTTGTTTGCCATTAGT
TAGGTAGCAGCAACATTTGTAAAACTACTATACAATGCAAGAGACTGTACTAGCTGGGAA
GAAATAATCTGGTGGAAATTAATGGCATCGGCATAGTTCTTGTCCAAAAAAAAAAAAAAA
AAAAAA

Homology of Contig U35_2794 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g04104.3	505	0.0	protein\|major facilitator superfamily antiporter, putative, expressed
Brachypodium v1_2	Bradi4g26366.2	492	0.0
Arabidopsis v10	AT5G13750.1	478	5e-176	\| Symbols: ZIFL1 \| zinc induced facilitator-like 1 \| chr5:4438318-4441289 FORWARD LENGTH=478