barSeed - Barley Seed Development Database

Probe ABC06757

Source Contig ABC06757

barSeed

Links

Affymetrix Source Sequence (2375 bp)

>ABC06757 2375
GAGAAAACAGCCGTCCCGTGGCCGTCGAACCCTATCAATCCCGCCGCCCGCCGCCCGCCG
CCCGGGCGCCGTGCCCAGCGTCCGGTGTGTCGTTCGACCTGCGCCCCTGCCCATCCGCTG
ACCGGCGAGGCGGCGCGCCGGTGACCGCGTTTGTCCAGACAGATCTCGACCCCGACACTG
GCGTCCTTCGGCGTCCCGCCTCAGCTAAAGGTTACCAGGCTCGCGTGTCCCGCCGCCATC
AAGCGCCACAGCCACCACTCGTGATGCCGACAGTCAGCGTTGGCCGCGACCGCCTCTTCG
CTGCACTCGGCAGGGTCTACACGCAAGACGAATTCGAGGCACTCTGCTTCGATTTCGGCA
TCGAACTTGACGATGTGACCACAGAGAAGGCCATCATCCGGAAGGAGAAGCACCTGGAGG
AGGATGTCGAAGCGGACGGTGATGATGAGGTCATCTACAAGATTGAGGTTGCCGCCAATA
GATATGATTTGTTATGTCTTGAAGGATTAGCAAGATCTCTTCGCATTTTCACTGGGAGTG
AAGCAACCCCTATATTTAAAATTGCTTCAATCTCCCGTGGTTCAATGCTTCAGATGCATG
TTAGACCACAGACCTCACAAATTAGACCATATGTAGTTTGTGCTGTCCTAAGAGGAGTAA
CTTTTGATGAAGTCAGATACAACAGCTTCATTGATCTTCAAGACAAACTCCATCAAAATA
TTTGCCGGAAGAGAACTCTTGTTGCTATCGGTACCCATGATTTGGACACTCTGCAAGGAC
CCTTCTCATACGAGGCTCTATCACCACATGAAATCAATTTTATCCCATTAAAACAGGAGC
AAAAGTTCAGAGCGGATGCATTGATGGATTTCTACAGATCTGACATGAAGTTGAAGAAGT
TTTTGCATATTATCGAGAACTCTCCAGTTTACCCAGTTATATATGATAGCAACAGAACTG
TATTATCGTTACCTCCTATCATCAATGGTGCACATTCTGCTATCACCCTGAAAACAAGGA
ATGTGTTTATCGAATGCACTGCTACAGATCTTACAAAAGCAAACATTGTTCTGAATACAA
TGGTTGCAATGTTTTCGGAGTACTGTGAAAATAAGTTTGAAGTGGAACCAGTTGAAGTGG
TATCTTATGATGGAAGCACAGCCATTTACCCTGATCTTTCATGTTATAAAATGGAAGTTT
CACTCTCTGATATTGTTGGACCCATTGGAATCTCCCTAGATGAGATGCAGGTTATCTCCC
TTCTGAACAAAATGCAATTGCAAGCGGAACTTTGTTCATCAAATGGGGAGCCTTGTATTT
CGGTGTATGTCCCTCCTACAAGGAGTGATGTTCTGCATGCTCGTGATCTAGCAGAGGATG
TTGCTATAGCTTATGGGTACAACAATGTGCCAAAATCAAAGCCAAAGTCTATGACAATAG
GTGGAAGGCAACCACTAAACCGTTTCTCTGATAAAATTCGTGCTGAGGTTGCAAGAGCTG
GTTATATGGAGGTGCTCACATTTGTTTTGACTTCACACGAAGAAAACTTTGACATGCTAA
ACAGGACAGACGATGGGAATAAAGCAGTCATTATTGCAAACCCCCGTACTTCTGAATTTG
AGGTTGTAAGAAGCAGTCTGATGTCATGTTTGTTGAAAACGCTGAAGCATAATATAGACC
ATCCAAGACCCATAAAGATTTTTGAAGTTGGTGATGTAGTGTCATTGGATACTTCACGTG
ATGTTGGTGCCTCTAATAATCGCCGGCTTGCAGCTTTGTACTGTAATAGTAATTCTGGAT
TTGAGGAAATTATGGGTTTGGTGGATAGGATTGTCAAAATCGTGAGCGCTCCACACATAA
ATTTCGGTCAGACTTACTATGTTCCTTCAAGTGAACCTGAGTTCTTTACTAAAAGGCAGT
GCAAAATTGTTATGAGTGATGGAAAGCAGGTGGGCTACTTTGGAATTGTCCATGCTGAGG
TGCTAAGAAAATTTGGCATTCCGGATCCCTGCACTTTCGTCGAGATTGACATTGAGGCTC
TTTTGTAGTTGCCATGAATGTGTGAATCAGGGGACTCACCTGTTGGTTTTGTTCGCTTGA
CAGTTTGGCAGGCGTGTGGTATCTCAACACAGATACCACAACAGGATAATCATTTTAGTT
TGGACACCACATGCTCAATTGTAGTAGCTCACATTGGTGCTTGAATGTTTTTGAGTTGGA
AAAAGGAAGAAATATCATGATACTGTAGATGCCTTAGTTTTTTGTGCGCGAAAGGTGTGC
CTTACTTCGCTTCCGATTTGATACAACTATACATCACCGTTTTGGCACATGTTTCTATGA
AATATGTCAGTTATTAATAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK374119	2358	0.0	2 - 2337	100	2336 / 2336	CUST_41421_PI390587928 CUST_41423_PI390587928	ABC06757 ABC06758
MLOC_65247.1	2412	0.0	29 - 1779	99	1748 / 1751	CUST_41423_PI390587928 CUST_41421_PI390587928	ABC06757 ABC06758
MLOC_65247.2	2251	0.0	22 - 1771	99	1747 / 1750	CUST_41423_PI390587928 CUST_41421_PI390587928	ABC06757 ABC06758
AK364607	2456	0.0	476 - 2453	94	1879 / 1994	CUST_41421_PI390587928	ABC06757 ABC06758 ABC13096
AK365098	4153	0.0	86 - 1809	96	1651 / 1724	CUST_41421_PI390587928	ABC06757 ABC06758 ABC07030
MLOC_65247.3	1427	0.0	1 - 1424	99	1421 / 1425	None	ABC06757 ABC06758
AK373215	3883	1e-105	19 - 227	100	209 / 209	CUST_41423_PI390587928 CUST_41421_PI390587928	ABC06757 ABC06758
MLOC_75022.1	1974	0.0	323 - 1967	94	1559 / 1661	CUST_41421_PI390587928	ABC06757 ABC06758
MLOC_75022.2	1523	0.0	77 - 1449	96	1319 / 1373	CUST_41421_PI390587928	ABC06757 ABC06758
MLOC_73231.1	898	2e-158	366 - 726	95	342 / 361	None	ABC06757
MLOC_62.2	290	4e-126	27 - 290	97	264 / 271	None	ABC06757
MLOC_62.1	429	5e-85	254 - 429	99	175 / 176	None	ABC06757
MLOC_92.1	494	3e-78	3 - 162	100	160 / 160	None	ABC06757
MLOC_92.2	162	2e-75	1 - 162	99	160 / 162	None	ABC06757