barSeed - Barley Seed Development Database

Probe CUST_41423_PI390587928

Source Contig U35_17116

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41423_PI390587928	Hv_44K_v2	CCGATTTGATACAACTATACATCACCGTTTTGGCACATGTTTCTATGAAATATGTCAGTT	1605	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.579	1.645	1.078	0.887	0.454	0.559
Raw	3530.237	5641.803	3320.987	4272.283	767.447	1032.131

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374119	2358	2e-24	2271 - 2330	100	60 / 60	plus	ABC06757 ABC06758
MLOC	AK373215	3883	2e-24	3774 - 3833	100	60 / 60	plus	ABC06757 ABC06758
MLOC	MLOC_65247.2	2251	2e-24	29 - 88	100	60 / 60	minus	ABC06757 ABC06758
MLOC	MLOC_65247.1	2412	2e-24	36 - 95	100	60 / 60	minus	ABC06757 ABC06758
JLOC1	JLOC1_42923.1	2351	8e-25	2242 - 2301	100	60 / 60	plus
Harvest21	ABC06757	2375	3e-25	2293 - 2352	100	60 / 60	plus	ABC06757
Harvest35	U35_17116	1707	3e-25	1606 - 1665	100	60 / 60	plus

Contig Sequence (1707 bp)

>U35_17116 1707 Hv_44K_v2
GCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATGCCCCTG
TCGATCCCTATCTTCCTTTATTTGACACATTAATTAATCTTTTTCAGGCTCTATCACCAC
ATGAAATCAATTTTATCCCATTAAAACAGGAGCAAAAGTTCAGAGCGGATGCATTGATGG
ATTTCTACAGATCTGACATGAAGTTGAAGAAGTTTTTGCATATTATCGAGAACTCTCCAG
TTTACCCAGTTATATATGATAGCAACAGAACTGTATTATCGTTACCTCCTATCATCAATG
GTGCACATTCTGCTATCACCCTGAAAACAAGGAATGTGTTTATCGAATGCACTGCTACAG
ATCTTACAAAAGCAAACATTGTTCTGAATACAATGGTTGCAATGTTTTCGGAGTACTGTG
AAAATAAGTTTGAAGTGGAACCAGTTGAAGTGGTATCTTATGATGGAAGCACAGCCATTT
ACCCTGATCTTTCATGTTATAAAATGGAAGTTTCACTCTCTGATATTGTTGGACCCATTG
GAATCTCCCTAGATGAGATGCAGGTTATCTCCCTTCTGAACAAAATGCAATTGCAAGCGG
AACTTTGTTCATCAAATGGGGAGCCTTGTATTTCGGTGTATGTCCCTCCTACAAGGAGTG
ATGTTCTGCATGCTCGTGATCTAGCAGAGGATGTTGCTATAGCTTATGGGTACAACAATG
TGCCAAAATCAAAGCCAAAGTCTATGACAATAGGTGGAAGGCAACCACTAAACCGTTTCT
CTGATAAAATTCGTGCTGAGGTTGCAAGAGCTGGTTATATGGAGGTGCTCACATTTGTTT
TGACTTCACACGAAGAAAACTTTGACATGCTAAACAGGACAGACGATGGGAATAAAGCAG
TCATTATTGCAAACCCCCGTACTTCTGAATTTGAGGTTGTAAGAAGCAGTCTGATGTCAT
GTTTGTTGAAAACGCTGAAGCATAATATAGACCATCCAAGACCCATAAAGATTTTTGAAG
TTGGTGATGTAGTGTCATTGGATACTTCACGTGATGTTGGTGCCTCTAATAATCGCCGGC
TTGCAGCTTTGTACTGTAATAGTAATTCTGGATTTGAGGAAATTATGGGTTTGGTGGATA
GGATTGTCAAAATCGTGAGCGCTCCACACATAAATTTCGGTCAGACTTACTATGTTCCTT
CAAGTGAACCTGAGTTCTTTACTAAAAGGCAGTGCAAAATTGTTATGAGTGATGGAAAGC
AGGTGGGCTACTTTGGAATTGTCCATGCTGAGGTGCTAAGAAAATTTGGCATTCCGGATC
CCTGCACTTTCGTCGAGATTGACATTGAGGCTCTTTTGTAGTTGCCATGTATGTGTGAAT
CAGGGGACTCACCTGTTGGTTTTGTTCGCTTGACAGTTTGGCAGGCGTGTGGTATCTCAA
CACAGATACCACAACAGGATAATCATTTTAGTTTGGACACCACATGCTCAATTGTAGTAG
CTCACATTGGTGCTTGAATGTTTTTGAGTTGGAAAAAGGAAGAAATATCATGATACTGTA
GATGCCTTAGTTTTTTGTGCGCGAAAGGTGTGCCTTACTTCGCTTCCGATTTGATACAAC
TATACATCACCGTTTTGGCACATGTTTCTATGAAATATGTCAGTTATTAATATTGTGAAG
AATTTGATGGTGGAAAAAAAAAAAAAA

Homology of Contig U35_17116 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48510.2	499	0.0	protein\|phenylalanyl-tRNA synthetase beta chain, putative, expressed
Brachypodium v1_2	Bradi4g06310.1	595	0.0
Arabidopsis v10	AT1G72550.1	598	5e-169	tRNA synthetase beta subunit family protein \| chr1:27319947-27323908 REVERSE LENGTH=598