barSeed - Barley Seed Development Database

Probe ABC06567

Source Contig ABC06567

barSeed

Links

Affymetrix Source Sequence (1285 bp)

>ABC06567 1285
GCAGGTGTGCCAGAGAATAAGGGGCAGGAAGGGGGTGAAGCGCAGGTCTCTGCGCAGCCG
GTGCCATCGAAGAATGAGCGCAGCGAGAGCCCCCCTCCCGGAATTCCTAAATCAACTGGC
GGGACAGGACATGAAGGGGGAGGAAGTTCAGGAAACAAGAAGCCTGCAGATGAATCAAAA
GAGGGGGCTGAGAAGTGTGAGGATCCAGCAGACACATGTTTGATTAAAGGGGAATTGTTT
GCTTGCCTTCAGGTGTCTAAGACAGCTTCAATTGGACAATTTTTTATAGTCCAGAATACT
GGCCAGAAAAAAGTAACTGTTGACGTCAAAGCAACATCAGATATAAGTATCAAGCAGACA
TTGGTACCTCTCAGCAAGGGTGAATCTAAAAGGGTTAGCATAATCTATAACGGTCCAAAT
GGTGGAGAGGTTACACTAAACGTTGGGACTGAGCATTGTGTCTTGCACACCAGGCAGCCA
GTTTATGATTGGCAACAACAATTTCAGCAGCTTACAGCTTATGCAACGACCGTGAAGCCA
ATCTATGGAGCCTATTTTGGTGTTTTCACGCTTGTCTTGGTTGGGGCCGTGTTTGCTTGT
TGCAAGTTTGCAGGGACAAAGCGCGATGGTGGGGTCCCATATCAGCAGCTTGAGATGGGA
TCTCGGGCTCCGGACTCATCAGGTGTAAACAACACTACAAGCACAGGAGATGGTTGGGAA
GATGGCTGGGATGATGACTGGGATGACGATGAAGCACCTGCAAAACCTTCAGAAAAAGGA
TCTGCTGGAAGCATATCGGCAAATGGCCTTTCTTTGAGATCTCCGACCAATAGCAAGGAC
GGATGGGATGTAGATTGGGATGACTAAGCTACAACAAAATGTTGAAGGCCCTGTCCGTTC
TTGTGAAACGAGAGAAGATAAGTTCATCTGAATGGCTCGCAGCAAATGCAGTATCCAAAC
CTTAACCCGAAACTTGATGGATCCATGCTTGGCAAGGTGACTCTTATCCTGGAAAACCAC
AGGCTTGCTTGTATTAATACGGTTTGTACAATAGTGTTCCACTGGTAATTTCGTTTACGA
GCTGCTGCACGAACTAGTGGTACAAATTGTGCTTTTTTTTTTGGCTGTAATACTATAGCA
TTAGTTACATGACCACGCACACCCTCGCTATTCTTTCGAAGAGGTACACCATTCTTTTTC
CCATGTCAGTTTTGGTGTTGAACAGTACCCTCCTGAATTTGGAACCTCATCGTGTTATGT
GTTCCATTTACTCAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_5773.1	1834	0.0	542 - 1813	100	1272 / 1272	CUST_17794_PI390587928 CUST_34924_PI390587928 CUST_13521_PI390587928	ABC06566 ABC06567
AK369718	1159	2e-66	310 - 480	94	160 / 171	CUST_13547_PI390587928 CUST_13546_PI390587928	ABC06566 ABC06567 ABC18391 ABC41286
MLOC_29600.2	306	2e-66	33 - 203	94	160 / 171	CUST_13547_PI390587928	ABC06566 ABC06567
MLOC_29600.4	1027	2e-66	31 - 198	94	158 / 168	CUST_13547_PI390587928	ABC06566 ABC06567
MLOC_29600.7	706	2e-66	167 - 337	94	160 / 171	CUST_13547_PI390587928	ABC06566 ABC06567
MLOC_29600.8	1177	2e-66	167 - 334	94	158 / 168	CUST_13547_PI390587928	ABC06566 ABC06567
MLOC_29600.10	566	2e-66	27 - 197	94	160 / 171	CUST_13547_PI390587928	ABC06566 ABC06567
MLOC_29600.5	506	8e-66	29 - 192	95	155 / 164	CUST_13547_PI390587928	ABC06566 ABC06567
MLOC_29600.11	715	8e-66	160 - 323	95	155 / 164	CUST_13547_PI390587928	ABC06566 ABC06567
MLOC_79340.3	1146	2e-61	834 - 1001	92	155 / 168	CUST_13547_PI390587928	ABC06566 ABC06567
MLOC_79340.4	794	2e-61	479 - 649	92	157 / 171	CUST_13547_PI390587928	ABC06566 ABC06567
MLOC_79340.5	676	2e-61	360 - 530	92	157 / 171	CUST_13547_PI390587928	ABC06566 ABC06567
MLOC_30393.1	457	2e-61	58 - 228	92	157 / 171	CUST_13547_PI390587928	ABC06566 ABC06567
MLOC_79340.1	1116	4e-59	953 - 1116	92	151 / 164	None	ABC06566 ABC06567
MLOC_29600.1	572	1e-53	334 - 469	95	129 / 136	None	ABC06566 ABC06567
MLOC_29600.6	813	1e-53	329 - 464	95	129 / 136	None	ABC06566 ABC06567
MLOC_29600.9	1303	1e-53	328 - 460	95	127 / 133	None	ABC06566 ABC06567
MLOC_29600.3	839	5e-53	332 - 460	96	124 / 129	None	ABC06566 ABC06567