barSeed - Barley Seed Development Database

Probe CUST_13521_PI390587928

Source Contig U35_16361

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13521_PI390587928	Hv_44K_v2	GAACAGTACCCTCCTGAATTTGGAACCTCATCGTGTTATGTGTTCCATTTACTCAAAAAA	1219	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.324	1.177	1.105	0.972	0.477	0.652
Raw	309.775	429.726	353.548	473.506	82.654	125.733

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5773.1	1834	3e-21	1760 - 1813	100	54 / 54	plus	ABC06566 ABC06567
JLOC1	JLOC1_3735.1	1793	2e-21	1674 - 1727	100	54 / 54	plus
Harvest21	ABC06567	1285	3e-25	1220 - 1279	100	60 / 60	plus	ABC06567
Harvest35	U35_16361	1285	3e-25	1220 - 1279	100	60 / 60	plus

Contig Sequence (1285 bp)

>U35_16361 1285 Hv_44K_v2
GCAGGTGTGCCAGAGAATAAGGGGCAGGAAGGGGGTGAAGCGCAGGTCTCTGCGCAGCCG
GTGCCATCGAAGAATGAGCGCAGCGAGAGCCCCCCTCCCGGAATTCCTAAATCAACTGGC
GGGACAGGACATGAAGGGGGAGGAAGTTCAGGAAACAAGAAGCCTGCAGATGAATCAAAA
GAGGGGGCTGAGAAGTGTGAGGATCCAGCAGACACATGTTTGATTAAAGGGGAATTGTTT
GCTTGCCTTCAGGTGTCTAAGACAGCTTCAATTGGACAATTTTTTATAGTCCAGAATACT
GGCCAGAAAAAAGTAACTGTTGACGTCAAAGCAACATCAGATATAAGTATCAAGCAGACA
TTGGTACCTCTCAGCAAGGGTGAATCTAAAAGGGTTAGCATAATCTATAACGGTCCAAAT
GGTGGAGAGGTTACACTAAACGTTGGGACTGAGCATTGTGTCTTGCACACCAGGCAGCCA
GTTTATGATTGGCAACAACAATTTCAGCAGCTTACAGCTTATGCAACGACCGTGAAGCCA
ATCTATGGAGCCTATTTTGGTGTTTTCACGCTTGTCTTGGTTGGGGCCGTGTTTGCTTGT
TGCAAGTTTGCAGGGACAAAGCGCGATGGTGGGGTCCCATATCAGCAGCTTGAGATGGGA
TCTCGGGCTCCGGACTCATCAGGTGTAAACAACACTACAAGCACAGGAGATGGTTGGGAA
GATGGCTGGGATGATGACTGGGATGACGATGAAGCACCTGCAAAACCTTCAGAAAAAGGA
TCTGCTGGAAGCATATCGGCAAATGGCCTTTCTTTGAGATCTCCGACCAATAGCAAGGAC
GGATGGGATGTAGATTGGGATGACTAAGCTACAACAAAATGTTGAAGGCCCTGTCCGTTC
TTGTGAAACGAGAGAAGATAAGTTCATCTGAATGGCTCGCAGCAAATGCAGTATCCAAAC
CTTAACCCGAAACTTGATGGATCCATGCTTGGCAAGGTGACTCTTATCCTGGAAAACCAC
AGGCTTGCTTGTATTAATACGGTTTGTACAATAGTGTTCCACTGGTAATTTCGTTTACGA
GCTGCTGCACGAACTAGTGGTACAAATTGTGCTTTTTTTTTTGGCTGTAATACTATAGCA
TTAGTTACATGACCACGCACACCCTCGCTATTCTTTCGAAGAGGTACACCATTCTTTTTC
CCATGTCAGTTTTGGTGTTGAACAGTACCCTCCTGAATTTGGAACCTCATCGTGTTATGT
GTTCCATTTACTCAAAAAAAAAAAA

Homology of Contig U35_16361 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g40040.1	372	9e-86	protein\|expressed protein
Brachypodium v1_2	Bradi2g22250.1	370	2e-114
Arabidopsis v10	None