barSeed - Barley Seed Development Database

Probe ABC06306

Source Contig ABC06306

barSeed

Links

Affymetrix Source Sequence (1820 bp)

>ABC06306 1820
GGATCCCCCGGGCTGCAGGTAATCACGAAGCGCAACGCAAGCGCCACAACTCAACTCCCC
CACTGCCTGCCCTCTGCCCCTTCCTCTGTCTCCTCCTCAAACCCCGCGCCGCCCAAGCGC
TTCCTCGCCGCCGCCGCCGCCGCCGGACCCAGCTAGGGTTCCGGCGAGCTCGCGGCCCCG
CTGGCCCGCCGCGCCTCCTCCCCCGAGGGCCCCGCTCCCCGATTTACAATAGCGGCGATG
CAAAAGGATACAGGCTCTGGCGATGTTTCTCCTTCTCATGCAGGACGTGTTAGACATCGA
AGGCGCCCTAATGAGACTGCCACCGATGGGAACAGAGCCAATGGAACGGTTTTGCTTGTC
AGCGACCAGAACAAGTACAAGTCTATGCTTATCCGTACATATTCAACTTTGTGGATGATT
GGAGGCTTTGTGTTCGTAGTTTATATGGGTCATCTTTATATCTGGGCCATGGTGGTTGTC
ATTCAAATATTTATGGCAACAGAGCTTTTTAACCTACTCAGAAGATCAAGCGAAGAGAAA
CAACTGCCAGGGTTCAGGCTGCTGAATTGGCACTTCTTCTTCACGGCAATGTTGTTTACT
TATGGGCGCTTTCTTAGTCGGGAGCTTGTTAACACAGTAACTTCAGATCACTTGCTGTAT
AAGGTCGTCAGCGGCCTAATAAAGTATCAGATGTTTATTTGCTATTTTCTTTATATTGCA
GGTTTTGTATGGTTTATTTTGACTCTGAAGAAGAAGACATACAATTATCAATTCAAACAG
TATGCCTGGACGCACATGATCCTTTTAACGGTTTTTGCCCAGTCCTCTTTCACCGTGGCA
AATATATTTGAAGGGATGTTCTGGTTTCTTCTCCCTGCTTCGCTCATTGTGATCAATGAC
ATTGCTGCGTATTTATTTGGGTTTTTTCTCGGGAGAACTCCATTGATCAAGTTATCACCA
AAGAAAACATGGGAAGGTTTTATTGGTGCATCGGTGACAACTATCATCTCTGCTTTTCTG
TTGGCAAACGTAATGGGCCGTTTCCAGTGGTTAACATGCCCAAGAAAGGACCTGTCGACA
GGGTGGCTTGTTTGTGATCCTGGTTCCATGTTTAAGCCAGAGCATTACTTTTTGGGGAAT
TGGGTGCCACAGTGGTTTCCATGGAAAGAAGTTTTTCTTTTACCCGTGCAGTGGCATGCT
TTAGCCCTTGGTTTGTTTGCATCGATAATAGCACCATTTGGAGGATTTTTTGCAAGTGGC
TTCAAGAGGGCTTTTAAAATAAAGGATTTTGGCGACAGTATACCTGGGCATGGTGGAATT
ACTGACCGAATGGATTGTCAAATGGTTATGGCAGTTTTTGCATACATATATCACCAATCA
TTTATCTCGCCCCACAATTTCTCTGTTGACACAATCTTGGATCAGATTGTAAGAAACCTA
ACCTACGAGGAGCAGAAATCCTTGTACCAGCAACTTGGGGAGATCTTCCGTGAAAGGCAG
TTTATGCAAAGCTGAGGATTTATTTGCGTATGAACCACACAAGACAGCTCTGTGGTTCAT
AATGTAGCTCTAGATCTATGTACAGCATCATAGCTCCTCTGTACCGTGATAGAGTGATGT
CCTTATCCAAACCATTGTACAGAACGGAGTGTGGATAGGGTTTAGGTTCTTGATCCGCTC
TCCACTTATGTTGCTTCTTTTAATCATCTGCGCTAATTCTCTCCTTGTTTCTTACCATCA
GTGTTCTTGTAAAAACATAGCTGGAAAAGCTTATTCGTGTATATCGCTGTCGGTCTCCGC
ATCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK373465	1800	0.0	2 - 1784	99	1777 / 1783	None	ABC06306 ABC06308
MLOC_80354.1	1751	0.0	91 - 1226	99	1135 / 1136	None	ABC06306
MLOC_80354.2	1528	0.0	75 - 1009	99	934 / 935	None	ABC06306
MLOC_80354.3	1809	0.0	351 - 1284	99	933 / 934	None	ABC06306
AK364073	2819	2e-93	4 - 201	98	195 / 198	None	ABC06306
MLOC_80354.4	1269	0.0	374 - 1269	99	895 / 896	None	ABC06306
AK366801	1771	0.0	283 - 1507	90	1104 / 1227	CUST_30917_PI390587928	ABC06306 ABC06308
AK363091	1778	0.0	184 - 1408	90	1103 / 1227	CUST_30919_PI390587928 CUST_30917_PI390587928	ABC06306 ABC06308
MLOC_38386.1	1023	0.0	1 - 636	99	635 / 636	None	ABC06306 ABC06308
MLOC_14454.1	1286	0.0	60 - 955	89	801 / 898	CUST_30917_PI390587928	ABC06306 ABC06308
MLOC_14454.2	1802	0.0	606 - 1501	89	801 / 898	CUST_30917_PI390587928	ABC06306 ABC06308
MLOC_14454.3	1912	0.0	716 - 1611	89	801 / 898	CUST_30917_PI390587928	ABC06306 ABC06308
MLOC_14454.4	1788	0.0	592 - 1487	89	801 / 898	CUST_30917_PI390587928	ABC06306 ABC06308
MLOC_38386.3	605	2e-138	168 - 438	99	270 / 271	None	ABC06306 ABC06308
MLOC_76113.1	1346	1e-124	230 - 559	91	301 / 330	None	ABC06306 ABC06308
MLOC_76113.2	702	5e-124	204 - 532	91	300 / 329	None	ABC06306 ABC06308
MLOC_38386.2	305	9e-117	1 - 229	100	229 / 229	None	ABC06306 ABC06308