barSeed - Barley Seed Development Database

Probe CUST_30919_PI390587928

Source Contig U35_2519

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30919_PI390587928	Hv_44K_v2	ACTTGTTGCTACTTCTTTTCTTTCCCTGCTATTGATTTATTAATTTGCCGGAAGCGCTTG	771	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.805	1.692	1.124	0.809	0.274	0.259
Raw	282.317	406.213	240.879	275.224	32.825	34.219

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363091	1778	2e-24	1674 - 1733	100	60 / 60	plus	ABC06306 ABC06308
Harvest35	U35_2519	859	3e-25	772 - 831	100	60 / 60	plus

Contig Sequence (859 bp)

>U35_2519 859 Hv_44K_v2
TTTATTGGTGCATCGGTGACAACCATCATCTCTGCTTTCCTGCTAGCGAATGTAATGGGC
CGCTTCCAGTGGTTTACATGCCCAAGAAAGGACCTGTCAACAGGGTGGCTTCAGTGCGAT
CCTGGCCCTATGTTTAAGCCAGAGCATTATTATCTGGGAGATTGGGCACCACATTGGTTT
CCATGGAAAGATGTGTTCCTAATGCCTGTGCAGTGGCATGCTTTAGCCCTTGGTTTGTTT
GCATCGATAATTGCACCATTTGGTGGATTTTTCGCAAGTGGCTTCAAGAGGGCTTTTAAA
ATAAAGGATTTTGGCGACAGTATACCTGGGCATGGTGGAATCACTGACCGAATGGACTGT
CAAATGGTCATGGCAGTTTTTGCATACATATACCACCAGTCATTCATCTCACCGCACAAT
TTCTCTGTTGACGCAATCTTGGATCAGATCTTAAGAAACCTGACGTACGAGGAGCAGAGA
AACTTGTATGAGCAACTCGGGGAGATGTTAGGCAACTTATGCAAAGCTGATAAACTGTCT
GCTTGCTTATGAAAAGCACACAATACGATACAGTAGGCTGGCTGTGTATGTTATTTATTT
GAGACCTGAGTTCGCCGCCATGAATGTAGCTCTAGATTCACCGTGTACAGCATCGTCGTC
GGAGCTCCTCTGTACCCTTGTGAGTTGTGATGGAAAACATTGTACAGAACGAATGTATGG
ACTATGGTTGATAGGGCTAACTAATTTAATTAGGTGCTTGATTCGCTGTGAACTTGTTGC
TACTTCTTTTCTTTCCCTGCTATTGATTTATTAATTTGCCGGAAGCGCTTGTTTTTCGTA
AAAAAAAAAGAGCGGCCGC

Homology of Contig U35_2519 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55360.3	426	3e-106	protein\|phosphatidate cytidylyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g05050.1	426	8e-117
Arabidopsis v10	AT1G62430.1	421	1e-93	\| Symbols: ATCDS1, CDS1 \| CDP-diacylglycerol synthase 1 \| chr1:23106274-23108923 REVERSE LENGTH=421