barSeed - Barley Seed Development Database

Probe ABC06099

Source Contig ABC06099

barSeed

Links

Affymetrix Source Sequence (1322 bp)

>ABC06099 1322
CCCGCCTCTCCCCAATCCTAGGGTTTCTCAATCCGCCCCTCCCTCACACCCCCCGCCGCC
GCCGTTCGCCGCACCCCGTAGGGTTTCTCGATCCGGCCCTCCCTCTCGCCCCCCGCTCCC
GCAGCTGCCCGCCGCCCGCCCGCGAAGATGTTGGAGCTGAGGCTGGTGCAGGGGAGCCTG
CTGAAGAAGGTGCTGGAGGCGATCAAGGAGCTGGTGACGGACGCCAACTTCGACTGCTCC
GGGACGGGCTTCTCGCTGCAGGCCATGGACTCGTCCCACGTCGCGCTCGTCGCCCTGCTC
CTCCGCTCCGAGGGCTTCGAGCACTACCGCTGCGACCGCAACCTCTCCATGGGCATGAAC
CTCGGCAACATGGCCAAGATGCTCCGCTGCGCGGGCAACGACGACATCATCACCATCAAG
GCCGACGACGGCTCCGACACCGTCACCTTCATGTTCGAGTCACCCAATCAGGATAAGATT
GCCGACTTCGAGATGAAGCTCATGGACATCGACAGCGAGCACCTCGGGATCCCCGACTCC
GAGTACCAGGCCATCGTTCGCATGCCCTCCTCGGAGTTCTCCAGGATCTGCAAGGATCTT
AGCAGCATCGGCGACACTGTTATTATCTCTGTCACCAAGGAGGGTGTCAAGTTCTCCACT
GCTGGAGATATTGGAACTGCAAACATTGTTTGCAGGCAGAACAAGACCGTTGACAAGCCT
GAGGAATCTACCATTATAGAAATGCAAGAGCCAGTGTCTCTTACCTTTGCTCTGAGGTAC
ATGAACTCCTTCACCAAGGCAAGCCCACTGTCAGACCAAGTCACCATCAGCCTCTCATCT
GAGCTGCCAGTTGTGGTTGAGTACAAGATAGGCGAGATGGGCTACATTAGGTTTTATTTG
GCACCGAAGATTGAAGAGGATGAGGAAATGAAGGCATGATTGTGTTTCCAGGATATGCTT
ATGTTGCCTACATTAGGATTTATCTGGCACCCAAGATCGAAGAGGACAAGGAAATGAAGG
CATGCTTGTGTTTCAAGGAGATGCTGATGTTGCCTCCATTCCCTAGTTATTAAACCAACC
TCCATTTGCTTAATGATTGTTTGTAAGCAAAAAAATGGTGGTGTTATGCTTGTTTTAGCT
ACTTCTGTATCTGTGACTATTGGTGGTCCATGGATTTCCATCGATGAATGTTGCTGTTTT
AGCTACTTGTATCTGTGACTGTTGGTCTTTGTTACACCAGTTCTGTTATTGTTAGGCTAA
GACATTTGGGAACTTTTATCATAAAATTCTACTGATTGGTCTCTTAAAAAAAAAAAAAAA
AA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK368339	1304	0.0	7 - 1304	98	1277 / 1298	CUST_37919_PI390587928	ABC06099 ABC06101
MLOC_2310.1	953	0.0	1 - 953	99	950 / 954	None	ABC06099 ABC06101
MLOC_34569.1	900	0.0	1 - 591	94	556 / 591	CUST_37920_PI390587928	ABC06099
MLOC_24852.1	400	7e-176	3 - 400	95	377 / 398	None	ABC06099
MLOC_30890.1	261	5e-113	3 - 260	95	246 / 258	None	ABC06099 ABC06101
MLOC_29650.1	209	3e-90	5 - 209	96	197 / 205	None	ABC06099 ABC06101
MLOC_35288.1	231	5e-88	1 - 231	92	213 / 231	None	ABC06099
MLOC_433.1	200	7e-82	5 - 200	95	186 / 196	None	ABC06099
MLOC_33653.1	207	1e-74	1 - 207	91	190 / 208	None	ABC06099
MLOC_35941.1	164	1e-64	1 - 142	99	140 / 142	None	ABC06099
MLOC_9283.1	155	2e-62	1 - 152	95	145 / 152	None	ABC06099