barSeed - Barley Seed Development Database

Probe CUST_37920_PI390587928

Source Contig U35_1974

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37920_PI390587928	Hv_44K_v2	CTAGTCCATGTTACACCAGTGCTGTTATGGTTAGATTTAGCATATTTTCTCCTTGACAGG	1104	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.331	1.498	1.201	0.852	0.283	0.261
Raw	2227.033	4031.794	2704.500	3102.597	351.077	357.217

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34569.1	900	2e-24	733 - 792	100	60 / 60	plus	ABC06099
JLOC1	JLOC1_22305.1	1029	8e-25	742 - 801	100	60 / 60	plus
Harvest21	ABC06100	972	3e-25	910 - 969	100	60 / 60	plus
Harvest35	U35_1974	1167	3e-25	1105 - 1164	100	60 / 60	plus

Contig Sequence (1167 bp)

>U35_1974 1167 Hv_44K_v2
GCCCCAATCCTAGGGTTTCTCAATCCGCCCCTCCCTCACACCCCCCGCCGCCGCCGTTCG
CCGCACCCCGTAGGGTTTCTCGATCCGGCCCTCCCTCTCGCCCCCCGCTCCCGCAGCTGC
CCGCCGCCCGCCCGCGAAGATGTTGGAGCTGAGGCTGGTGCAGGGGAGCCTGCTGAAGAA
GGTGCTGGAGGCGATCAAGGAGCTGGTGACGGACGCCAACTTCGACTGCTCCGGCACCGG
CTTCTCGCTGCAGGCCATGGACTCCTCCCACGTCGCGCTCGTCGCCCTCCTCCTCCGCTC
CGAGGGCTTCGAGCACTACCGCTGCGACCGCAACCTCTCCATGGGCATGAACCTCGGCAA
CATGGCCAAGATGCTCCGCTGCGCCGGCAACGACGACATCATCACCATCAAGGCCGACGA
CGGCTCCGACACCGTCACCTTCATGTTCGAGTCGCCCAATCAGGATAAGATTGCCGACTT
CGAGATGAAGCTCATGGACATCGACAGCGAGCACCTCGGCATCCCCGACTCGGAGTACCA
GGCCATCGTCCGCATGCCGTCCTCCGAGTTCTCCAGGATCTGCAAGGACCTCAGCAGCAT
CGGCGACACCGTTATTATCTCTGTCACCAAGGAGGGTGTCAAGTTCTCCACTGCTGGAGA
CATTGGGACTGCAAACATCGTTTGCAGGCAGAACAAGACTGTTGACAAGCCTGAAGAATC
TACCATTATAGAGATGCAAGAGCCGGTGTCACTCACCTTTGCTCTGAGGTACATGAACTC
TTTCACCAAGGCAAGCCCACTGTCGGACCAAGTCACCATCAGCCTCTCGTCTGAACTGCC
GGTGGTTGTGGAGTACAAGATCGGCGAGATGGGCTACATTAGGTTTTATCTGGCACCAAA
GATTGAAGAAGATGAGGAAATGAAGGCATGATTGTGTTCCAAGGATATGCTTGTCTTGCC
TACTTTTTCCTTAGCTGTTAAATTGCTGTTTGCTTAACTATTGTTTGTAAGCAAAAATGA
TGTTATCCTTGTTTTAGCTACCCTTGTATCTGTGACTGTTGCTCCATGGATTTCCAAGGA
TGAATGTTAGATTAGTGAATTATGCTAGTCCATGTTACACCAGTGCTGTTATGGTTAGAT
TTAGCATATTTTCTCCTTGACAGGAAT

Homology of Contig U35_1974 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g56130.1	264	4e-179	protein\|PCNA - Putative DNA replicative polymerase clamp, expressed
Brachypodium v1_2	Bradi3g54630.1	264	6e-180
Arabidopsis v10	AT2G29570.1	264	2e-164	\| Symbols: PCNA2, ATPCNA2 \| proliferating cell nuclear antigen 2 \| chr2:12650139-12651598 REVERSE LENGTH=264