barSeed - Barley Seed Development Database

Probe ABC05727

Source Contig ABC05727

barSeed

Links

Affymetrix Source Sequence (1185 bp)

>ABC05727 1185
GTCTGCCTGCCTTCTGCCTCTGCGCCTGCTTACTTCCATCGTCACTTCGTCACCGCGCCC
TAACCAAGACATGGCCTCCGACGGCGTCATCACCCATCGCAGCGTCGAGGTTAACGGGGT
GCGCCTGCACGTCGCCGAGGCCGGCCCCGCCGGAGCGCCCGTGGTGCTGCTGCTGCACGG
GTTCCCGGAGCTGTGGTACGCCTGGCGGCACCAGATGCCCGCGCTGGCCACGGCGGGCTA
CCGCGCCGTCGCCCCCGACATGCCCGGCTACGGCGACTCCGAGGCGCCCTCCGCCGGCCC
GGACAAGTACACTGCGCTGCATGTCGTCGGCGACCTTGTCGCGCTCATCGACTCCCTCGG
CCAGAAGCAGGTCTTCGTGGTGGCGCACGACTGGGGCGCCATAATAGCCTGGAGCTTGTG
CCAGTTCCGGCCTGACAGGGTGAAGGCGCTGGTCGCCTTGAGCGTCCCCTTCACCCCTCG
GAGCCCGGCCGTGAAGCCCGTCGACGGCGTCAGGGCTCTCTACGGCGACGACTTCTACAT
CGTCAGCTTCCAGGAGCCTGGGGCAATTGAAGCAGAATTCAAACGCCTTGGTACGGAGTT
GGTGCTAAGAAAGTTTTTCGCTGATCGAACTGCTAGCCCACTGTTCATCCCGAAGAGCGG
ATGGGGCTCACCAGATGATGAGGTGCCCTTGCCGAGCTGGATCACAAAGCAGGACATCAA
GTACTACACGACCAAGTTTGACAAGTCTGGTTTCACCGGGGGAATGAACTACTACCGTGC
TTTGAATAAGACATGGGAGTTAACTTCGCCATGGACAGGAGCTGAGATAGTGGTGCCAAC
GAAATTCATAGTTGGTGACTTAGATCTAACATACAATATTGCTGGCGCACAAGATTTCAT
TAACAAAGGTGGCCTGAAGAAGTTTGTTCCATTACTAGATGGCGTGGTGATAATGAAAGA
TGTCGGGCATTTCATAAATGAAGAAAAGCCAGAGGAAATTAATGTGCTCGTAATCAACTT
CATAAAGAAATTCAACTAAACTAAAGTATATCGAATACATAATGAATAAGGTCAAAGTGT
GCATGGTTATTGAAAAAATTGTATTTTGACCATTGTATTACTGTGATGAAAATGTACGAA
CATTTATGAAAGTATGTTTTTACTGTCCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_76233.2	1120	0.0	1 - 1056	100	1056 / 1056	CUST_17297_PI390587928	ABC05727
MLOC_76233.3	948	0.0	95 - 884	100	790 / 790	CUST_17298_PI390587928	ABC05727
MLOC_56895.1	1468	0.0	363 - 1379	86	881 / 1021	None	ABC05727
AK375949	1214	0.0	65 - 1081	86	879 / 1021	None	ABC05727
MLOC_20382.1	621	1e-158	92 - 621	86	455 / 530	None	ABC05727
MLOC_76233.1	297	9e-155	1 - 297	100	297 / 297	CUST_17297_PI390587928	ABC05727
MLOC_56895.2	1043	2e-56	507 - 752	83	206 / 248	None	ABC05727