barSeed - Barley Seed Development Database

Probe CUST_17297_PI390587928

Source Contig U35_2497

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17297_PI390587928	Hv_44K_v2	GTCGGGCATTTCATAAATGAAGAAAAGCCAGAGGAAATTAATGTGCTCGTAATCAACTTC	961	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.633	0.529	0.556	1.467	3.006	6.343
Raw	3.416	3.788	5.199	22.699	19.049	42.429

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76233.1	297	2e-24	71 - 130	100	60 / 60	minus	ABC05727
MLOC	MLOC_76233.2	1120	2e-24	36 - 95	100	60 / 60	minus	ABC05727
JLOC1	JLOC1_50835.1	1233	8e-25	1024 - 1083	100	60 / 60	plus
Harvest21	ABC05727	1185	3e-25	962 - 1021	100	60 / 60	plus	ABC05727
Harvest35	U35_2497	1185	3e-25	962 - 1021	100	60 / 60	plus

Contig Sequence (1185 bp)

>U35_2497 1185 Hv_44K_v2
GTCTGCCTGCCTTCTGCCTCTGCGCCTGCTTACTTCCATCGTCACTTCGTCACCGCGCCC
TAACCAAGACATGGCCTCCGACGGCGTCATCACCCATCGCAGCGTCGAGGTTAACGGGGT
GCGCCTGCACGTCGCCGAGGCCGGCCCCGCCGGAGCGCCCGTGGTGCTGCTGCTGCACGG
GTTCCCGGAGCTGTGGTACGCCTGGCGGCACCAGATGCCCGCGCTGGCCACGGCGGGCTA
CCGCGCCGTCGCCCCCGACATGCCCGGCTACGGCGACTCCGAGGCGCCCTCCGCCGGCCC
GGACAAGTACACTGCGCTGCATGTCGTCGGCGACCTTGTCGCGCTCATCGACTCCCTCGG
CCAGAAGCAGGTCTTCGTGGTGGCGCACGACTGGGGCGCCATAATAGCCTGGAGCTTGTG
CCAGTTCCGGCCTGACAGGGTGAAGGCGCTGGTCGCCTTGAGCGTCCCCTTCACCCCTCG
GAGCCCGGCCGTGAAGCCCGTCGACGGCGTCAGGGCTCTCTACGGCGACGACTTCTACAT
CGTCAGCTTCCAGGAGCCTGGGGCAATTGAAGCAGAATTCAAACGCCTTGGTACGGAGTT
GGTGCTAAGAAAGTTTTTCGCTGATCGAACTGCTAGCCCACTGTTCATCCCGAAGAGCGG
ATGGGGCTCACCAGATGATGAGGTGCCCTTGCCGAGCTGGATCACAAAGCAGGACATCAA
GTACTACACGACCAAGTTTGACAAGTCTGGTTTCACCGGGGGAATGAACTACTACCGTGC
TTTGAATAAGACATGGGAGTTAACTTCGCCATGGACAGGAGCTGAGATAGTGGTGCCAAC
GAAATTCATAGTTGGTGACTTAGATCTAACATACAATATTGCTGGCGCACAAGATTTCAT
TAACAAAGGTGGCCTGAAGAAGTTTGTTCCATTACTAGATGGCGTGGTGATAATGAAAGA
TGTCGGGCATTTCATAAATGAAGAAAAGCCAGAGGAAATTAATGTGCTCGTAATCAACTT
CATAAAGAAATTCAACTAAACTAAAGTATATCGAATACATAATGAATAAGGTCAAAGTGT
GCATGGTTATTGAAAAAATTGTATTTTGACCATTGTATTACTGTGATGAAAATGTACGAA
CATTTATGAAAGTATGTTTTTACTGTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2497 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g19150.1	332	1e-168	protein\|hydrolase, alpha/beta fold family domain containing protein, expressed
Brachypodium v1_2	Bradi1g42880.1	331	0.0
Arabidopsis v10	AT4G02340.1	324	1e-128	alpha/beta-Hydrolases superfamily protein \| chr4:1035722-1037403 FORWARD LENGTH=324