barSeed - Barley Seed Development Database

Probe ABC04183

Source Contig ABC04183

barSeed

Links

Affymetrix Source Sequence (687 bp)

>ABC04183 687
AGCCGGAACTGAAATTGAGCCTATGGGTGACCTTAACACTGAAGCTGAGAAGAAACTTGG
TCGGCTTGTTAAGGAGAAGTATGGCACAGAATTTTTCATCCTCTATCGATATCCTTTGGC
TGTGCGCCCTTTCTACACCATGCCTTGCTACGATGATCCAGCTTACAGCAACTCTTTTGA
TGTCTTCATTCGAGGTGAGGAAATTATTTCTGGAGCGCAAAGAATACATACGCCTGAACT
TCTGAGGAAACGTGCAATCGAGTGTGGAATTGATGCGAGTACTATTGCATCGTACATTGA
ATCATTCAGCTACGGTGCACCTCCTCATGGCGGTTTTGGGGTCGGGTTGGAGAGAGTGGT
TATGCTGTTCTGCGCCCTCAACAACATCAGGAAGACATCGCTTTTCCCTCGCGACCCACA
GAGGCTCGCGCCATAAGTTTCCTTTCTGTGTCGACAGCTTGCACCCATGGTTGTCATCAT
CTTCACCAATCTGCTAGTCAAGTACTGAAACAACCTACGATGATGGGTGCAGCGTGGTTC
ATTACGTTTGAGTTAATGGCGTGGCCAATGTGTAGCACCGTCAGTGTGTGTTGGAGCTTC
TGTTAATACTCACAAAGCTGCTTATGTTGATAACCAATCTCGAACAAAATGAAAATTAAT
CTGCTTTTCCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK248364.1	1926	0.0	1257 - 1926	100	670 / 670	CUST_36094_PI390587928 CUST_36096_PI390587928	ABC04183 ABC44386
MLOC_12497.1	1786	0.0	1 - 441	96	424 / 442	CUST_31993_PI390587928	ABC04183 ABC44386
MLOC_12497.2	1931	0.0	1 - 418	96	401 / 419	CUST_31993_PI390587928	ABC04183 ABC44386
MLOC_57322.2	2026	7e-99	375 - 578	99	203 / 206	CUST_36094_PI390587928	ABC04183
MLOC_57322.1	3474	7e-99	513 - 708	100	196 / 196	None	ABC04183
AK365985	2341	3e-98	1316 - 1741	82	350 / 427	CUST_24053_PI390587928 CUST_36095_PI390587928	ABC04183
MLOC_57322.3	1538	2e-65	1 - 136	100	136 / 136	CUST_36094_PI390587928	ABC04183