barSeed - Barley Seed Development Database

Probe CUST_36096_PI390587928

Source Contig U35_1505

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36096_PI390587928	Hv_44K_v2	TTGGAGCTTCTGTTAATACTCACAAAGCTGCTTATGTTGATAACCAATCTCGAACAAAAT	590	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.303	1.257	1.152	0.943	0.416	0.433
Raw	14901.367	22257.153	18167.167	23318.893	3612.983	4088.237

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248364.1	1926	2e-24	1847 - 1906	100	60 / 60	plus	ABC04183 ABC44386
JLOC1	JLOC1_8383.1	1848	8e-25	1467 - 1526	100	60 / 60	plus
Harvest21	ABC04184	2013	3e-25	1917 - 1976	100	60 / 60	plus
Harvest21	ABC04183	687	3e-25	38 - 97	100	60 / 60	minus	ABC04183
Harvest35	U35_1507	2034	3e-25	1938 - 1997	100	60 / 60	plus
Harvest35	U35_1505	687	3e-25	591 - 650	100	60 / 60	plus

Contig Sequence (687 bp)

>U35_1505 687 Hv_44K_v2
AGCCGGAACTGAAATTGAGCCTATGGGTGACCTTAACACTGAAGCTGAGAAGAAACTTGG
TCGGCTTGTTAAGGAGAAGTATGGCACAGAATTTTTCATCCTCTATCGATATCCTTTGGC
TGTGCGCCCTTTCTACACCATGCCTTGCTACGATGATCCAGCTTACAGCAACTCTTTTGA
TGTCTTCATTCGAGGTGAGGAAATTATTTCTGGAGCGCAAAGAATACATACGCCTGAACT
TCTGAGGAAACGTGCAATCGAGTGTGGAATTGATGCGAGTACTATTGCATCGTACATTGA
ATCATTCAGCTACGGTGCACCTCCTCATGGCGGTTTTGGGGTCGGGTTGGAGAGAGTGGT
TATGCTGTTCTGCGCCCTCAACAACATCAGGAAGACATCGCTTTTCCCTCGCGACCCACA
GAGGCTCGCGCCATAAGTTTCCTTTCTGTGTCGACAGCTTGCACCCATGGTTGTCATCAT
CTTCACCAATCTGCTAGTCAAGTACTGAAACAACCTACGATGATGGGTGCAGCGTGGTTC
ATTACGTTTGAGTTAATGGCGTGGCCAATGTGTAGCACCGTCAGTGTGTGTTGGAGCTTC
TGTTAATACTCACAAAGCTGCTTATGTTGATAACCAATCTCGAACAAAATGAAAATTAAT
CTGCTTTTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1505 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g46130.1	550	2e-92	protein\|tRNA synthetases class II domain containing protein, expressed
Brachypodium v1_2	Bradi4g43390.1	559	2e-95
Arabidopsis v10	AT4G31180.1	558	2e-76	Class II aminoacyl-tRNA and biotin synthetases superfamily protein \| chr4:15156696-15159362 FORWARD LENGTH=558