barSeed - Barley Seed Development Database

Probe ABC03529

Source Contig ABC03529

barSeed

Links

Affymetrix Source Sequence (1991 bp)

>ABC03529 1991
GATTCCCCCTCCCTCCCCGCCCCGTCGCCGCACCGCCTCCGCCTCCGCCCGCGCCCTTGG
GCGAGAGCTCCGTCACGCAGCCTCCCGCCCGCCCGCCCGCCCCCGTCAGGTCGACGATGG
ACGCAGCAGGCAGGGATGCCAACCCCTTGGCCGGCTACCGGATCGGCAAAACCCTCGGCA
TCGGGTCCTTTGGCAAGGTCAAGATCGCCGAGCATATAATTACGGGACACAAGGTCGCAA
TCAAGATCCTCAATCGCCGCAAGATCAAGAGCATGGAGATGGAAGAGAAAGTGAAAAGAG
AAATCAAGATACTGAGATTATTTATGCATCCTCATATCATACGGCTTTATGAGGTCATAG
ATACCCCAGCGGATATTTATGTTGTTATGGAGTATGTTAAATCTGGAGAGTTATTTGACT
ATATTGTTGAGAAGGGAAGATTACAAGAGGAAGAAGCTCGTCGCTTTTTCCAGCAAATTA
TATCTGGTGTGGAATATTGCCATAGAAACATGGTGGTTCACCGTGATCTGAAGCCAGAGA
ACCTTCTGTTGGATTCGAAATGTAATGTTAAGATTGCAGATTTTGGCTTAAGTAATGTTA
TGCGTGACGGACACTTTCTGAAGACTAGTTGTGGTAGCCCAAATTATGCAGCACCCGAGG
TGATATCAGGTAAACTGTACGCTGGCCCTGAAGTTGATGTTTGGAGCTGTGGAGTTATTC
TTTATGCTCTTCTTTGTGGCACTCTTCCATTTGACGATGAGAATATACCAAACCTTTTTA
AGAAAATAAAGGGTGGAATATACACCCTTCCTAGTCACTTGTCTCCTTTAGCAAGAGATT
TGATCCCAAGAATGCTGGTTGTTGATCCTATGAAGAGGATTACTATACGTGAAATTCGTG
AACATTCATGGTTCAAAGCTAGACTTCCACGCTATTTGGCCGTGCCTCCTCCAGACACTG
CTCAACAAGTTAAAAAGCTTGACGATGAAACTCTGAATGATGTCATCAAAATGGGATTTG
ACAAGAATCAGCTAACTGAATCTCTTCAAAAGAGATTGCAAAATGAGGCGACAGTTGCAT
ATTATTTACTCTTGGACAATAAACTTCGTACAACCAGTGGCTATCTTGGAGCCGAGTATC
AAGAGTCAATGGACTCATCTTTCTCCCAAATTTCACCTGAAACACCAAGTTCAGCTTCTG
AAGCTAGGCAGTATGGTTCTCCCGGGTTTGGCTTGAGGCAACATTTTGCAGCTGAGAGGA
AATGGGCTCTCGGTCTTCAGTCTCGAGCGCATCCACGAGAAATCATAACTGAAGTGCTTA
AAGCTCTGCAAGAGCTAAATGTTTGCTGGAAGAAGATTGGGCACTATAACATGAAGTGCA
GGTGGAGTCCTGGCTTTTTTGAGAATATGATGCATAACAACAATGGATTCGGTGTGGAGT
CTGCTATAATTGAAGCTGATGGCCTCGGTGACAAATCAACCCACATCGTGAAGTTTGAAA
TTCAGCTGTACAAAACAAGGGATGATAAGTATCTTCTCGACTTGCAAAGGGTTAGTGGAC
CACAGCTCCTCTTTCTGGACCTGTGTTCTGCCTTTCTAACCCAGCTGAGAGTCCTTTGAT
CCTGAAGATGGTGACTTCCCAACTGCAAAGCCCCGCAGCTTCCTGCAGAGTGCGAAGTTA
CAGTCAAGGTGTACATAGCTATCATAATCCTCCAGTAGAATCTACTCCTGGGGTATGTAG
ACGCTAGAGAACCACGTGGTTTTGTTTTGATGGTTCAGGACTTATTTACTAAACCAGAGG
TGACGGGCAAGAGGCAACCTATTCCTTCGTCCGCCTGTCACCAATGGTGTTCTATGACGC
TTGTAGACCTATATTTAGTCCTTGGACGTTTTTGGCTTGGTAATGTTCTTTACTGGCATA
ATGCCGGCCTCCGAATAACCTCCCTTGTTACAACTCAAGTTGTGATGTTGACATAAAAAA
AAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_11287.2	1581	0.0	1 - 1539	100	1539 / 1539	None	ABC03529 ABC03530
MLOC_11287.1	1658	0.0	877 - 1655	100	779 / 779	None	ABC03529 ABC03530 ABC37602
MLOC_67799.1	1947	0.0	39 - 1558	80	1223 / 1533	None	ABC03529 ABC03530
AK252272.1	2019	0.0	112 - 1630	80	1223 / 1533	None	ABC03529 ABC03530
AK364046	1907	0.0	289 - 1477	77	920 / 1198	CUST_41430_PI390587928 CUST_33551_PI390587928	ABC03529 ABC06240 ABC06241
MLOC_75806.1	1489	1e-165	12 - 760	81	609 / 753	CUST_33551_PI390587928	ABC03529 ABC06240
MLOC_75806.2	793	3e-147	4 - 609	82	499 / 606	CUST_33551_PI390587928	ABC03529 ABC06240
MLOC_72819.2	912	1e-91	4 - 187	100	184 / 184	None	ABC03529
MLOC_72819.1	189	6e-89	2 - 189	98	185 / 188	None	ABC03529