barSeed - Barley Seed Development Database

Probe CUST_33551_PI390587928

Source Contig U35_3065

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33551_PI390587928	Hv_44K_v2	CATATCATCCGGCTTTATGAGGTCATTTACACACCTACAGATATATTTGTTGTGATGGAA	350	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.191	0.357	0.944	1.525	1.238	1.377
Raw	11.162	26.757	77.173	183.845	55.787	68.221

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364046	1907	2e-24	401 - 460	100	60 / 60	plus	ABC03529 ABC06240 ABC06241
MLOC	MLOC_75806.2	793	2e-24	510 - 569	100	60 / 60	minus	ABC03529 ABC06240
MLOC	MLOC_75806.1	1489	2e-24	589 - 648	100	60 / 60	minus	ABC03529 ABC06240
JLOC1	JLOC1_50566.1	1272	8e-25	352 - 411	100	60 / 60	plus
Harvest21	ABC06961	928	3e-25	351 - 410	100	60 / 60	plus
Harvest35	U35_3065	928	3e-25	351 - 410	100	60 / 60	plus

Contig Sequence (928 bp)

>U35_3065 928 Hv_44K_v2
GCACCCCCGGAGAAGGACTAACCGACCCCAAAACCTCCTCCGCTGGGCGCTCTCGTCGTC
TCCGCTGCCGAGCCGCGCGCCTCCTCCCCGTCCGAGCGGTTGACCGCGGGATTTGGCCAG
TGAAAATGGATGGGAACACTAGAGGAGGCGGGCATTCTGAAGCGTTAAAGAACTACAATC
TGGGCAGAACATTAGGTATAGGCACATTTGGAAAAGTGAGGATTGCAGAACATAAGCATA
CAGGGCACAAAGTTGCTATAAAGATTCTGAACCGTCGTCAAATGAGAACTATGAACATGG
AAGAGAAAGCAAAGAGAGAGATCAAGATATTGAGGTTGTTCATTCACCCTCATATCATCC
GGCTTTATGAGGTCATTTACACACCTACAGATATATTTGTTGTGATGGAATATTGCAAGT
ATGGGGAGCTATTCGACTGCATTGTTGAGAAAGGGCGGTTACAGGAAGATGAGGCTCGTC
GAATCTTCCAGCAGATTATATCTGGTGTTGAATACTGCCACAGAAACATGGTTGTTCATC
GTGATCTAAAGCCAGAAAACCTGTTACTTGATTCCAAATATAATGTGAAACTTGCCGACT
TTGGATTAAGTAATGTCATGCATGATGGCCATTTTCTGAAGACTAGCTGCGGGAGTCCAA
ACTATGCTGCACCGGAGGTTATCTCAGGTAAATTGTACGCTGGACCTGAGGTTGATGTTT
GGAGCTGTGGGGTGATACTTTATGCTCTTCTTTGTGGCACTCTTCCATTTGATGATGACA
ATATTCCCAACCTGTTCAAAAAGATAAAGGGAGGCATCTATATCCTTCCAAGTCATTTAT
CTGCTCTTGCAAGGGATTTGATCCCAAGAATGCTTGTTGTTGATCCTATGAAGAGAATCA
CAATTCGTGAAATTCGAGAACACCCATG

Homology of Contig U35_3065 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17980.1	549	0.0	protein\|CAMK_KIN1/SNF1/Nim1_like_AMPKh.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g65630.3	391	0.0
Arabidopsis v10	AT3G01090.2	535	8e-159	\| Symbols: AKIN10, KIN10 \| SNF1 kinase homolog 10 \| chr3:31437-34143 REVERSE LENGTH=535