barSeed - Barley Seed Development Database

Probe ABC02541

Source Contig ABC02541

barSeed

Links

Affymetrix Source Sequence (2653 bp)

>ABC02541 2653
GAACATGCCTACTGAGAGGTCAGCAGGACAACATAGCCATATGAAGGGAAACTCTGAAAC
CCACCAGGAGTGAATGCATCTAAAAGTTCACATGCTGGGGTTAGTATAGCTGGTGGTGCC
AGGGCTGGCCATGAAGCATTACCATCTACTGAGGGTGGAGAGATTGGCAAGTCAGGATCA
TCTTTGAATGGTGGGGCTACCGGTGAGGGTAACAAAGGGCGCCTATTTAATGAACCTGCT
GCGTCCCATAATACTTCGAAAGTTGAAAGAGAAGAAGGTGAACTATCGCCGAATGGAGAT
TTTGAAGAGGACAACTTTGTGCCTTTTGAAGATGGCGCGTCTAAAACAAAGGAAGGTTCT
ACGAGCAGAGCATTCAAGGTTAGACCTGGTCAAGTGGAACCTCATGCTGAGGCAGCTGGC
GAGAATGACGCTGATGATGAGGAAAGCACTCAAAGGTCTACCGAGGACAGTGAAAATGCT
TCTGAGGCTGGTGAAGATGCATCGGGAAGTGAATCTGGTGATGGCGAGCAGTGTTCTCGT
GAAGATCATGACGAGGAAGAAGATATGGATCATGATCAGGATGCGAAGGCAGAAAGTGAG
GGTGAGGCAGAGGGGACAACTGAGAACCATGACGTTGAAGGAGGAATATCGTTACCCGGA
ATATCATTACCTTCATCAGAACGCTTTCTGTACTCGGCTAAACCGCTGGCCAAGCATGTA
CCCTCATCTTTACATGGTCGGGAGAACAGATCATCACATATATTTTATGGGAACGATTCA
TTTTATATCTTGTTCAGGTTGCATCAGATGCTGTATGAAAGACTGCTTTCAGCAAAGACA
AACTCTTCAAGTGCTGAAAAGAAATGGAGAATCTCCAAGGATACAAACCCACCTGACCTA
TATGCAAGGTTCATAAAGGCACTGTACAACTTGCTCGATGGTACTTCTGATAATACCAAG
TTTGAGGATGACTGCCGTGCTATTATTGGGACCCAGTCATACGTTCTCTTTACTTTGGAT
AAACTGATATACAAAGTTGTGAAGCAGCTTCAAGCCATAGCAACAGATGAAATGGACAGC
AAGCTTCTCCAGCTTTACATATACGAGAAGTCAAGATCCCCTGGGAGGTTCTTTGATCTG
GTCTATCATGAAAACGCCCGTGTCCTACTCCATGACGAGAGCATGTATCGTTTCGAATGT
TGCTCAAGTCCAACGAGGTTGTCTATTCAGCTGATGGAATATGGTCATGAAAAGCCTGAA
GTGACTGCGGTATCCATTGAGCCAAATTTTGCCTCGTATCTTTTCAGCGAGTATCTGTCA
AATTCATCAGGCACGATGTTGCCTGAAGGTGTCTTCCTTGGAAGGAACAAGCGGAAACAT
TCAAATGATGGTGAGCCTTCAGATTCATTAAAGGCCATGGATGGTATCAAAGTTGCTAAT
GGTCTTGAATGCAAGATATCCTGCAAGACCTCCAAGGTCTCCTATGTCCTTGACACCGAA
GATTTCTTGTTTCGGTTGAGAAAGAGGAGGAGGCTTTCACCTGGTGGAAACGTGGCTGAC
AAGTCACCGACTTCCAAAAAGTATGCTGCAAAAGTGCAGCGCTTCCATTTGTTTCTATCC
AAGCCTTAAGAGGGCCATAGGCAAAAAAAAACATTGGCGCCTTGCAGACATTGTATCCAA
ATCAGGAGATGCCGCTGGGGTTGCGACCGCCTTGCTCTTGCTTCGACAGTGACAAGAATA
ATAATAATCAGCTGGCCGCTGGATAGATGATATACTTGGTAAATACAGCAAAGCAAAGCA
TGTTAGAGCCACCTCAGTCAGCCTTAGGCCGCGCCGAAAAAAGATGTGTGTGTGCGTGTC
TATTTGTAAATATGTACTGTCAGAAGAATGTTGTTTGTTCTGTTAACATGTTACCTGTAG
TGTCTTTTTGGTCGTAGAAGGATGATCACCATTTGTTGATGTTGGTATAGGTCTCTTGTT
ATGTCATATTGACTCAGTTTTTGGGTTCAAGATATGTAGCCTTGGTCGGTTAAATGCAAG
TATTGCAACAGTCATTGTTTTTAATGTGATGATTCTAGTTATGCTGTTTGGTTGCCTTAA
AAAAAACAACCCAATCCGCGTCAAGGGAATCAAGCAGAGAGAATCCCCAAGAAGAAGAAG
AAGAAGAAGAAGAGAGTCGCCGGCGGCGGAAGGCAGCAAGAAGATGACTCGGGGCAACCA
GAGGGACCGCGACCGCGAGCGCGCGGCGGCGCGGAAGCCCAACTCCAAGAACGGCGGCGA
CGGCCTCACCCCGGAGCAGCGCCGCGAGAGGGACAAGAAGGCGCTCGAGGAGAAGAACGC
CAAGAAGGCGGCGCAGGCCTCCGGGAGCACCTCCACGGACGCCAAGACCAAGGACGGCAA
GAAGTAGTAGTAGGAGAGGCGTCGCCGCCACCACCGGGATGCCGGCGCCGCCTCTTCGCG
ACTACCATAAAGTTTGTACCCTTATTGTTTGCAGCATCTGCTGATCTTTGTGCCTTAATC
GTGTATGGTTGGTTAAAACTGTCGTTAGCTGCAGTCTTTGTTGCCATATGAGTCTGTACT
CTTGATGAAATCCTCAACCCACGATGATAATAATCAGCAGCCTTCTGGTTTGGTTCAAAA
AAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_68482.3	4604	0.0	2443 - 4543	99	2100 / 2101	CUST_32655_PI390587928 CUST_30870_PI390587928	ABC02541 ABC37816
MLOC_68482.5	4692	0.0	2537 - 4637	99	2100 / 2101	CUST_30870_PI390587928 CUST_32655_PI390587928	ABC02541 ABC37816
MLOC_68482.4	4603	0.0	2442 - 4542	99	2100 / 2101	CUST_30870_PI390587928 CUST_32655_PI390587928	ABC02541 ABC37816
MLOC_68482.2	4536	0.0	3995 - 4536	100	542 / 542	CUST_32655_PI390587928	ABC02541 ABC37816
MLOC_68482.1	4527	0.0	4175 - 4527	100	353 / 353	CUST_32655_PI390587928	ABC02541 ABC37816
MLOC_5186.1	846	0.0	359 - 846	99	488 / 491	None	ABC02541
MLOC_5186.2	1411	1e-171	805 - 1132	100	328 / 328	CUST_22764_PI390587928	ABC02541
MLOC_65169.2	4468	1e-166	3085 - 4180	77	860 / 1121	CUST_17884_PI390587928 CUST_24399_PI390587928 CUST_36749_PI390587928 CUST_32870_PI390587928	ABC02541 ABC11192 ABC11193 ABC21626
MLOC_65169.1	4863	1e-166	2987 - 4082	77	860 / 1121	CUST_17884_PI390587928 CUST_24399_PI390587928 CUST_36749_PI390587928 CUST_32870_PI390587928	ABC02541 ABC11192 ABC11193 ABC21626
MLOC_65169.3	1483	1e-136	109 - 895	78	618 / 792	CUST_24399_PI390587928 CUST_17884_PI390587928	ABC02541 ABC11192 ABC11193