barSeed - Barley Seed Development Database

Probe CUST_36749_PI390587928

Source Contig U35_25545

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36749_PI390587928	Hv_44K_v2	CCTTGGAGTCTCTGTGCTCAATGATCATTGGGTATCAGTTACCTCAGGAAGTGAGGATTA	803	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.282	1.029	1.528	1.180	0.621	0.518
Raw	780.024	947.794	1260.510	1433.883	285.136	260.049

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65169.2	4468	2e-24	1699 - 1758	100	60 / 60	plus	ABC02541 ABC11192 ABC11193 ABC21626
MLOC	MLOC_65169.1	4863	2e-24	1601 - 1660	100	60 / 60	plus	ABC02541 ABC11192 ABC11193 ABC21626
JLOC1	JLOC1_42866.1	4796	8e-25	1594 - 1653	100	60 / 60	plus
Harvest35	U35_25545	863	3e-25	804 - 863	100	60 / 60	plus

Contig Sequence (863 bp)

>U35_25545 863 Hv_44K_v2
CCTCATCCATCAACTGCTGAACGTGACAGCAGTGTTGATCGCCCTGATCTTGAGCATGAC
CCCGACAGAAAGCGTATCGACAAGGAAAAGGATCGTAAGATCGACCGGGACAGGAAAGAT
CATGAGAAGGATGGTGAGTATGAAAGCAAAGATTTGGACGGAGGACTACGCAAGCGCAAA
GCTTTCTCAAAGAAGCTGGAGGGTGAGACACACCAAGGGGCGGCAAGCATCTCCGCTTCG
TCATACAATGACGACGCACTGAAAGGTGCGTACACACAAGAGTTCGTTTTCTGCGAGAAA
GTCAAGGAGAAGCTAGAGCCTGAAGCTTACCAGGAGTTTTTGAAATGCCTTCACATATAC
AGCCAGGAAATAATTACAAGAAGTGAATTGAAAAATTTGGTACATGACATACTTCAGCGC
TACCCAGAGCTTATGAATGGATTTAGCGAGTTCTTGGAACATTGTGAAAACATAGATGGC
TTTCTGGATGGAGTCATCAATAAAAGGCAAACATCACGAACAGTAAAGGCATTGGAAAAA
GAGAGAGATAAAGGGCGTGCAGGGGAGGACAGGGAAAGAGATGCTGAAAAACTGAGTGAA
AAGGAACGAGAGAGGCTTGATAAAGTGTCTGCGCTCAATTCTAAGGAAGCCACTACCCAC
AAAGCTACTGCGTTCTCTACCAAAGAGAAGTACCTATGCAAGCCAATATCAGAGCTTGAC
CTCTCAAACTGTCAGCGGTGTACTCCTAGTTACCGACTTCTGCCTAAAAATTACCCCGTG
CCTGCTTCAAGTTGCAGAACTGACCTTGGAGTCTCTGTGCTCAATGATCATTGGGTATCA
GTTACCTCAGGAAGTGAGGATTA

Homology of Contig U35_25545 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01020.2	1319	5e-104	protein\|transcriptional repressor, putative, expressed
Brachypodium v1_2	Bradi2g40052.3	1239	2e-138
Arabidopsis v10	AT5G15020.1	1367	9e-56	\| Symbols: SNL2 \| SIN3-like 2 \| chr5:4859408-4865569 REVERSE LENGTH=1367