barSeed - Barley Seed Development Database

Probe ABC01878

Source Contig ABC01878

barSeed

Links

Affymetrix Source Sequence (1569 bp)

>ABC01878 1569
GCCCCCTTTCCTCTCCGGTCTAACCAAAGTCCGACCTCCGACGAGCTACCACCCGGCCAT
GGCGACCACCGACATCCGCCTCTCCATCGCGCACCAGACCCGCTTCGCGCTCCGCCTTGC
CTCCGCCATCTCCTCGCCCTCCCACGCCAAGGGATCCTCCGGCAACGCTGCCTTCTCCCC
GCTCTCGCTCCACGTTGCGCTCAGCCTCGTCGCGGCCGGCGCCGGCGGCGCCACGCGTGA
CCAGCTTGCTGCCACGCTCGGGGCCGCGGAGAAAGGCGACGCCGAGGGCCTCCACGCGCT
CGCCGAGCAGGTGGTGCAGGTCGTGCTCGCCGACGCGTCGGGCGCTGGCGGCCCGCGCGT
CGCCTTCGCCAACGGCGTCTTCGTCGACGCCTCGCTCAAACTCAAGCCTTCCTTCAAGGA
TCTCGTAGTGGGCAAGTACAAGGCCGAGACGCAGTCCGTGGACTTCCAAACTAAGGCTCC
TGAAGTTGCTGGTCAAGTGAACTCCTGGGTAGAAAAAATCACAACAGGTCTCATCAAAGA
GATCCTCCCTGCAGGGTCTGTTGACAGTACCACTAGACTGGTTCTTGGTAATGCCCTTTA
TTTTAAAGGAGCTTGGACTGAGAAGTTTGATGCATCTAAGACAAAAGACGAGAAGTTCCA
CCTCCTTGATGGGAGCTCAGTTCAAACACCATTCATGTCCAGTACAAAGAAGCAATACAT
TTCGTCTTATGACAGCTTGAAAGTACTGAAGCTTCCTTACCAGCAAGGCAGGGACAAGAG
GCAGTTCTCCATGTACATTCTTCTTCCAGAAGCACAGGATGGTCTCTGGAACTTGGCCAA
CAAGTTGAGCACCGAACCAGAGTTCATGGAGAAGCATATGCCAATGCAGAAGGTTCCAGT
CGGGCAATTCAAGCTCCCGAAGTTCAAGATATCATTTGGGTTTGAAGCGTCTGATATGCT
CAAAGGTTTGGGTCTCCAGCTGCCATTCAGCTCAGAGGCAGATCTTTCGGAGATGGTGGA
TTCACCCGCAGCACGGAGCTTGTATGTCTCATCCGTTTTCCACAAGTCGTTTGTCGAGGT
GAATGAAGAAGGCACCGAGGCTGCGGCAGCAACTGCTGCAGTGGTCACACTTAGGTCACT
GCCTGTAGAGCCCGTGAAGGTGGATTTCGTTGCGGATCACCCTTTCCTCTTCCTTATCCG
AGAGGACCTCACAGGCGTGGTGCTATTCGTCGGTCATGTGTTCAATCCCTTGGTGTCTGC
ATAATGTGTTTGTTCTGGATCGCTGCATTGGCAGTGGCCTCGACTGTCACATGTGAGTGG
AGGGTTTCAACTTTAGATCATGCTGCCTGTGCAATAAATCGAGTGGATGTTTTTGTTTTC
GAATAATGGCTTGCTTGATGTATGAAGGTTGTGGTGAGTTGGTGACAATAATTTCGGATT
GCTGTGGAGTTTTGTGCTCTCAGTTGCTTGATACATGTGATGGCCAAATGCTTCTTAGCG
AAGCATGAACCATGGTCTTTGCATAATTTGGGTGATTGATCTGGATTGTTTTAAAAAAAA
AAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK367138	1427	0.0	2 - 1427	99	1426 / 1427	None	ABC01877 ABC01878 ABC03059
MLOC_47517.1	550	0.0	1 - 550	100	550 / 550	None	ABC01878 ABC03059
MLOC_79085.1	1330	0.0	59 - 533	100	475 / 475	None	ABC01878
MLOC_10176.1	1382	0.0	70 - 1294	80	992 / 1246	CUST_22027_PI390587928	ABC01877 ABC01878 ABC43727
MLOC_47416.1	334	2e-171	8 - 334	100	327 / 327	CUST_22026_PI390587928	ABC01878
MLOC_78140.1	3037	7e-152	1862 - 2644	79	635 / 801	CUST_41883_PI390587928 CUST_41882_PI390587928	ABC01878 ABC03059
MLOC_79770.1	2235	2e-138	875 - 1657	78	627 / 801	CUST_41883_PI390587928 CUST_41882_PI390587928	ABC01878 ABC03059
MLOC_26707.1	213	6e-108	1 - 213	100	213 / 213	None	ABC01877 ABC01878
MLOC_52646.1	232	3e-105	1 - 232	97	224 / 232	None	ABC01878