barSeed - Barley Seed Development Database

Probe CUST_22027_PI390587928

Source Contig U35_14790

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22027_PI390587928	Hv_44K_v2	AATTTGAAGCATCTAGCTTGCTCAGAGCTTTGGGTCTCCAATTGCCATTTAGCGAAGAGG	922	GeneList: black MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.054	0.029	0.167	2.999	8.453	17.901
Raw	8.478	5.481	41.659	1137.863	1113.638	2560.280

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10176.1	1382	2e-24	937 - 996	100	60 / 60	plus	ABC01877 ABC01878 ABC43727
JLOC1	JLOC1_6639.1	1495	8e-25	1019 - 1078	100	60 / 60	plus
Harvest21	ABC01877	1472	3e-25	956 - 1015	100	60 / 60	plus	ABC01877
Harvest35	U35_14790	1433	3e-25	923 - 982	100	60 / 60	plus

Contig Sequence (1433 bp)

>U35_14790 1433 Hv_44K_v2
CTCAACTCTACCACAGCCCAACGAACCACCACACCAGCCATGGCAACCACCCTCGCCACC
GACGTCCGTCTCTCCATCGCACACCAGACCCGCTTCGCCCTCCGCCTCGCTTCCGCCATC
TCCTCCAACCCCGAGCGTGCTGCCGGCAATGTCGCCTTCTCTCCGCTCTCCCTGCACGTC
GCACTCAGTCTCATCACCGCTGGCGCGGGCGGCGCCACCCGTGACCAGCTCGTCGCCATA
CTCGGAGATGGGGGTGCAGGTGACGCCAAGGAACTGAACGCGCTCGCGGAGCAGGTGGTG
CAATTTGTGCTCGCCAATGAGTCCAGCACCGGTGGCCCGCGCATCGCCTTCGCCAACGGC
ATCTTTGTCGATGCGTCGCTCTCGCTCAAGCCTTCCTTCGAGGAGCTCGCTGTGTGCCAG
TACAAGGCCAAGACACAGTCCGTGGATTTCCAGCATAAGACTCTAGAAGCTGTTGGTCAA
GTGAACTCATGGGTAGAGCAAGTCACCACAGGTCTCATCAAACAGATCCTTCCTCCAGGA
TCTGTTGACAATACTACAAAACTGGTCCTTGGTAATGCTCTTTATTTCAAAGGGGCCTGG
GATCAAAAGTTTGATGAATCAAATACAAAATGTGACAGTTTCCACCTTCTTGACGGGAGC
TCAATTCAAACACAATTCATGTCCAGTACAAAGAAGCAATACATTTCCTCTTCCGACAAC
TTGAAGGTACTTAAGCTTCCTTACGCGAAGGGTCATGACAAGAGGCAGTTTTCCATGTAC
ATTCTTCTTCCTGGAGCACAAGATGGTCTCTGGAGTTTGGCCAAGCGGTTGAGCACTGAA
CCGGAGTTCATCGAGAACCATATCCCAAAGCAGACGGTTGAAGTTGGTCGGTTCCAGCTC
CCCAAGTTCAAGATATCATATCAATTTGAAGCATCTAGCTTGCTCAGAGCTTTGGGTCTC
CAATTGCCATTTAGCGAAGAGGCTGATCTGTCAGAGATGGTGGATTCTTCGCAAGGGCTG
GAAATCTCACATGTCTTCCACAAGTCGTTTGTCGAAGTGAACGAAGAAGGAACTGAGGCT
GGCGCAGCTACAGTTGCAATGGGCGTGGCCATGTCAATGCCCCTGAAGGTGGATTTGGTG
GATTTTGTCGCGAATCACCCTTTCCTCTTCCTTATTCGGGAAGACATTGCCGGTGTGGTG
GTCTTCGTAGGTCATGTGACCAATCCCCTCATATCTGCATAATGTGCTTGCTATGAATCT
GCTGTCCTGGGAGTGACCTCTTCTATATCATTTAGAGTAAAACATGTAATAAGTGGATGG
TTTCAACATCTGACCATGATGCCCATGTAATAAATACAATAAATGCTCATGTTCCTTTTA
TAAAAAAAAAAAAAAAAAAAAGCATGCTATTTGTGAGAAAAAAAAAAAAAAAA

Homology of Contig U35_14790 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g41438.1	406	2e-164	protein\|serpin domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g14730.1	402	0.0
Arabidopsis v10	AT1G47710.1	391	2e-115	Serine protease inhibitor (SERPIN) family protein \| chr1:17558271-17560061 FORWARD LENGTH=391