barSeed - Barley Seed Development Database

Probe ABC01846

Source Contig ABC01846

barSeed

Links

Affymetrix Source Sequence (2050 bp)

>ABC01846 2050
GGCCGAGCCCGTCCTTCGCCATGGACCCCTACAAGCACCGCCCGTCCAGCTCCTTCAACT
CCCCGATGTGGAGCACCAACTCCGGCGCGCCCGTCTGGAACAACGACAACTCCCTCACCA
TCGGATCCCGAGGTCCGATCCTGCTGGAGGACTACCACCTGGTCGAGAAGATCGCCGACT
TCGACCGCGAGCGCATCCCGGAGCGGGTGGTGCACGCCCGTGGCGCGAGCGCCAAGGGCT
TCTTCGAGGTGACCCACGACGTGTCCCACCTGACCTGCGCCGACTTCCTCCGCGCGCCGG
GCGTGCAGACCCCCGTCATCGTGCGCTTCTCCACCGTGATCCACGAGCGCGGTTCCCCGG
AGACGCTCCGCGACCCGCGCGGCTTCGCCATCAAGTTCTACACCCGGGAGGGCAACTGGG
ACCTTGTCGGCAACAACTTCCCCGTCTTCTTCATCCGCGACGGCATGAAGTTCCCTGACA
TGGTGCACGCGCTCAAGCCCAACCCCAAGACCCACATCCAGGAGAACTGGCGCGTCCTCG
ACTTCTTCTCCCACCACCCGGAGTCGCTCCACATGTTCACCTTCCTCTTCGACGACATCG
GCGTGCCCGCCGACTACCGCCACATGGACGGCTCCGGCGTCAACACCTACACCCTCGTCA
ACCGCGCCGGCAAGGCGCACTACGTCAAGTTCCACTGGAAGCCCACCTGCGGCGTCAAGT
CCCTCCTCGAGGACGAGGCCGTCACCGTCGGCGGCACCAACCACAGCCACGCCACCAAGG
ACCTCACCGACTCCATCGCCGCCGGAAACTACCCGGAGTGGACCTTCTACATCCAGACCA
TCGACCCGGACCACGAGGACCGCTTCGACTTCGACCCGCTCGACGTGACCAAGACGTGGC
CCGAGGACGTGGTGCCGCTGCAGCCCGTGGGCAGGCTCGTCCTCAACCGCAACATCGACA
ACTTCTTCGCCGAGAACGAGCAGCTGGCTTTCTGCCCCGGGATCATCGTCCCCGGGGTCT
ACTACTCCGACGACAAGCTGCTGCAGACCAGGATCTTCTCCTACTCCGACACGCAGCGCC
ACCGCCTCGGGCCAAACTACCTGCTGCTGCCGGCCAACGCGCCCAAGTGCTCCCACCACA
ACAACCACTACGACGGGCTCATGAACTTCATGCACCGCGACGAGGAGGTCGACTACTTCC
CCTCCAGGTTCGACCCCGCCAAGCACGCGCCCCGCTACCCCATCCCGGCGCGCGCGCTCA
ACGGCCGCCGCGAGAAGGCATGCATTGACAAGGAGAACAACTTCAAGCAGCCAGGGGAGA
GGTACCGCTCCATGGACCCGGCAAGGCAAGAGCGATTCATCAACAGATGGATCGATGCGC
TGTCCGACCCCCGCCTCACCCACGAGATCAAGGCCATCTGGCTCTCCTACTGGTCTCAGG
CTGACAAGTCTCTTGGCCAGAAGCTTGCGAGCCGTCTCAGCGCGAAGCCGAGCATGTAAT
CACCAGTCCTCAATGGCGCACGTACTACGTGAGCAAATCAGATATCTGCTTCGGTCGTGG
AAGCATGCATGCATGCATGCATGCATTCTTCCCTCTTATCGGCAAAGGATTAATTTAAGT
ACCAAATGCTACATCAGCTACTTCATTTTACCGAGCCTATTTTGCAAAACAAGGACATAC
GTACGATTCTACACCACATTATGCGCATTGTCGTCTGTCATTCATGTAATAATGTGTACA
AGAGCCCGTCTATCCTCATACTTCATGATTATTGTAAGGTGAATGCATCTTGAATAATGA
ACCAAATTACGAATAAGTTGAATAGTAAAGCCCTGTTTGAAACCATAATAGATTATGATA
ATCTGGATTATGAATATAAATTATATATTCTGGTTTATAAAAATAATTTAGGTGGACATG
TTTGGAGGCCAGATTATATAAACTGTAATCCAGGTCTTACATTGCATAATGACCTGTCTG
CCCTCTTTTTTTTTTAAAAAAAAGAGGAGGATGGCGGTGATAGGAATGTAATTATCTATA
GCTTTACAAG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_76546.1	2193	0.0	347 - 2193	99	1836 / 1847	CUST_22076_PI390587928	ABC01846
MLOC_76546.2	1815	0.0	179 - 1813	99	1627 / 1635	None	ABC01846
AK361207	1802	0.0	89 - 1269	84	995 / 1186	CUST_32697_PI390587928 CUST_35963_PI390587928	ABC01846 ABC37511
MLOC_11835.2	1442	0.0	279 - 1345	85	913 / 1071	CUST_35963_PI390587928	ABC01846
MLOC_11835.1	1731	1e-116	1247 - 1634	86	338 / 391	None	ABC01846
AK373353	2471	2e-74	1159 - 1382	90	201 / 224	None	ABC01846 ABC04691 ABC24430 ABC35180
AK360285	3555	8e-73	2615 - 2833	89	201 / 225	CUST_22116_PI390587928 CUST_40240_PI390587928 CUST_28504_PI390587928	ABC01846 ABC24430
MLOC_53230.1	1778	1e-61	1 - 153	95	145 / 153	CUST_22116_PI390587928	ABC01846
MLOC_47641.1	959	1e-61	2 - 185	90	171 / 190	None	ABC01846
MLOC_81483.2	2051	2e-58	377 - 597	84	190 / 226	None	ABC01846 ABC24430
MLOC_74517.1	1274	1e-56	938 - 1159	83	189 / 227	None	ABC01846 ABC11746 ABC24430
MLOC_51173.2	1110	1e-55	912 - 1110	87	180 / 208	None	ABC01846
MLOC_72833.1	1387	2e-54	773 - 932	91	146 / 160	None	ABC01846
MLOC_72831.1	1931	2e-54	1306 - 1465	91	146 / 160	None	ABC01846
MLOC_27801.1	1268	3e-52	1114 - 1268	91	141 / 155	None	ABC01846
MLOC_81983.1	621	1e-51	452 - 620	89	150 / 169	None	ABC01846