barSeed - Barley Seed Development Database

Probe CUST_22076_PI390587928

Source Contig U35_14774

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22076_PI390587928	Hv_44K_v2	CCGTCTATCCTCATACTTCATGATTATTGTAAGGTGAATGCATCTTGAATAATGAACCAA	1745	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.554	4.417	1.238	0.827	0.342	0.190
Raw	179.056	245.232	55.231	60.654	7.554	3.713

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76546.1	2193	2e-24	2091 - 2150	100	60 / 60	plus	ABC01846
JLOC1	JLOC1_51042.1	2369	8e-25	2064 - 2123	100	60 / 60	plus
Harvest21	ABC01846	2050	3e-25	1746 - 1805	100	60 / 60	plus	ABC01846
Harvest21	ABC01844	732	3e-25	635 - 694	100	60 / 60	plus
Harvest21	ABC01841	802	3e-25	592 - 651	100	60 / 60	plus
Harvest35	U35_14774	1863	3e-25	1746 - 1805	100	60 / 60	plus
Harvest35	U35_14771	802	3e-25	592 - 651	100	60 / 60	plus

Contig Sequence (1863 bp)

>U35_14774 1863 Hv_44K_v2
GGCCGAGCCCGTCCTTCGCCATGGACCCCTACAAGCACCGCCCGTCCAGCTCCTTCAACT
CCCCGATGTGGAGCACCAACTCCGGCGCGCCCGTCTGGAACAACGACAACTCCCTCACCA
TCGGATCCCGAGGTCCGATCCTGCTGGAGGACTACCACCTGGTCGAGAAGATCGCCGACT
TCGACCGCGAGCGCATCCCGGAGCGGGTGGTGCACGCCCGTGGCGCGAGCGCCAAGGGCT
TCTTCGAGGTGACCCACGACGTGTCCCACCTGACCTGCGCCGACTTCCTCCGCGCGCCGG
GCGTGCAGACCCCCGTCATCGTGCGCTTCTCCACCGTGATCCACGAGCGCGGTTCCCCGG
AGACGCTCCGCGACCCGCGCGGCTTCGCCATCAAGTTCTACACCCGGGAGGGCAACTGGG
ACCTTGTCGGCAACAACTTCCCCGTCTTCTTCATCCGCGACGGCATGAAGTTCCCTGACA
TGGTGCACGCGCTCAAGCCCAACCCCAAGACCCACATCCAGGAGAACTGGCGCGTCCTCG
ACTTCTTCTCCCACCACCCGGAGTCGCTCCACATGTTCACCTTCCTCTTCGACGACATCG
GCGTGCCCGCCGACTACCGCCACATGGACGGCTCCGGCGTCAACACCTACACCCTCGTCA
ACCGCGCCGGCAAGGCGCACTACGTCAAGTTCCACTGGAAGCCCACCTGCGGCGTCAAGT
CCCTCCTCGAGGACGAGGCCGTCACCGTCGGCGGCACCAACCACAGCCACGCCACCAAGG
ACCTCACCGACTCCATCGCCGCCGGAAACTACCCGGAGTGGACCTTCTACATCCAGACCA
TCGACCCGGACCACGAGGACCGCTTCGACTTCGACCCGCTCGACGTGACCAAGACGTGGC
CCGAGGACGTGGTGCCGCTGCAGCCCGTGGGCAGGCTCGTCCTCAACCGCAACATCGACA
ACTTCTTCGCCGAGAACGAGCAGCTGGCTTTCTGCCCCGGGATCATCGTCCCCGGGGTCT
ACTACTCCGACGACAAGCTGCTGCAGACCAGGATCTTCTCCTACTCCGACACGCAGCGCC
ACCGCCTCGGGCCAAACTACCTGCTGCTGCCGGCCAACGCGCCCAAGTGCTCCCACCACA
ACAACCACTACGACGGGCTCATGAACTTCATGCACCGCGACGAGGAGGTCGACTACTTCC
CCTCCAGGTTCGACCCCGCCAAGCACGCGCCCCGCTACCCCATCCCGGCGCGCGCGCTCA
ACGGCCGCCGCGAGAAGGCATGCATTGACAAGGAGAACAACTTCAAGCAGCCAGGGGAGA
GGTACCGCTCCATGGACCCGGCAAGGCAAGAGCGATTCATCAACAGATGGATCGATGCGC
TGTCCGACCCCCGCCTCACCCACGAGATCAAGGCCATCTGGCTCTCCTACTGGTCTCAGG
CTGACAAGTCTCTTGGCCAGAAGCTTGCGAGCCGTCTCAGCGCGAAGCCGAGCATGTAAT
CACCAGTCCTCAATGGCGCACGTACTACGTGAGCAAATCAGATATCTGCTTCGGTCGTGG
AAGCATGCATGCATGCATGCATGCATTCTTCCCTCTTATCGGCAAAGGATTAATTTAAGT
ACCAAATGCTACATCAGCTACTTCATTTTACCGAGCCTATTTTGCAAAACAAGGACATAC
GTACGATTCTACACCACATTATGCGCATTGTCGTCTGTCATTCATGTAATAATGTGTACA
AGAGCCCGTCTATCCTCATACTTCATGATTATTGTAAGGTGAATGCATCTTGAATAATGA
ACCAAATTACGAATAAGTTGAATAGTAAAAACCTGTTTGAAACCATAAAAAAAAAAAAAA
AAA

Homology of Contig U35_14774 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g03910.1	493	protein\|catalase domain containing protein, expressed
Brachypodium v1_2	Bradi1g76330.1	493
Arabidopsis v10	AT4G35090.1	492	\| Symbols: CAT2 \| catalase 2 \| chr4:16700937-16703215 REVERSE LENGTH=492