barSeed - Barley Seed Development Database

Probe ABC01227

Source Contig ABC01227

barSeed

Links

Affymetrix Source Sequence (1760 bp)

>ABC01227 1760
GAGAGAGAAAGTGACAGAGAGAGGTAGAGAGAGAGAGGGAGAGGGGGGAGAGGAGACCCT
GACCAATGCCAAGAACAAGAAGAGATCAGTGAGAAGGCCAGGCGAAAATCCCCACCGGGC
GAGAGGAGACGACCACCGGCCTCCTCCGAGAACAAGAGCAAGAACAAGAAGGAATCCATC
CCGGAGCATCCACGAGGGAATAAAGCCGGAAAGGCAGGCCGAGGAGGAGAAAAAAAAGCT
CTTCCGGCGATGGAGAAGGGGATGGATCCGGCGCTGCTGGACAACATCATCGCCAGGCTG
CTGGAGGTGAAGAGCCTCAAGCCCGGGAAGAACGCGCAGCTGTCCGAGTCGGAGATCAAG
CAGCTCTGCGCCGCCTCCAAGGAGATCTTCCTCGCGCAGCCCAACCTCCTGGAGCTCGAG
GCCCCCATCAAAATCTGCGGTGATGTTCATGGTCAATATTCTGATCTCCTGAGGCTCTTT
GAATATGGTGGATATCCTCCTCAGTCCAACTATCTTTTCTTGGGCGATTACGTGGACCGA
GGAAAGCAGAGCCTTGAGACAATATGCCTTCTTTTGGCTTATAAGGTCAAGTATCCTGAG
AACTTCTTTCTTCTAAGGGGCAACCATGAATGTGCATCAGTAAACCGCATCTATGGATTC
TATGATGAGTGCAAGCGCAGATTCAGTGTAAAACTCTGGAAAACGTTTACAGACTGTTTT
AACTGCTTACCGGTATCAGCATTGATAGATGAAAAGATTCTATGCATGCATGGAGGTCTT
TCTCCAGAGTTGAACAAGCTGGATCAAATACTCAACCTCAATCGCCCCACAGATGTTCCT
GATACCGGGCTACTTTGTGACCTTCTTTGGTCCGATCCTTCCAATGAAGCGCAAGGGTGG
GCTATGAATGATCGAGGTGTCTCATATACATTTGGACCTGATAAAGTGGCTGAATTCCTT
GAGAAGCATGATTTAGACCTCATCTGCCGAGCCCATCAGGTTGTTGAGGATGGTTACGAG
TTCTTTGCTGATCGTCAGCTAGTTACAATATTTTCAGCGCCTAATTACTGTGGGGAATTC
GATAATGCCGGTGCCATGATGAGTGTAGACGAGACGCTGATGTGCTCCTTCCAAATACTC
AAACCTGCAAGGAAAATGTTGCCTGGTTCGACTAATAACAAGTCTGGCTTCAAGTCAATG
AGAGGATGGTGACGGTGGCACGGCGATTGGTGAGCAAGCTGTGGTCTGATCTGCTGGCAG
GCACGTGCCTACCATGAGCGGCTGCGACTAACCGGCGTTTTCGCCGACAGCTCGGGCCCG
GACCGGGACAAGAACGCAGATTGTACAACTCTCTCGTCGATGGACTGTACATCGTTCATG
TTGGATTAACACTTGTTGTAATGTATTATTGTTTTTCTACCGTGCGGATCTCTTTATCGT
GAATGAAACTGTTTCTCCTCCTCCCCCCCTTCCAAATTCAAAGGGATCAGACAGGCTACG
CCAATAAAAACAGCTAAGAGTCCAGATTGCTGGCGTGTGATCATAACAGACGGGAGAAAC
ATCGCCTGCTGTTTATGAACCAGCTCGACTGAATTTGAGCTCGTACGAGTGTGTGGTTCG
CATGATTCAAGCTTTGTGCAAGAATCGATGCACCCGCATCATCGTCCTTGCTGTTCCATT
TTAACTGTGTTGGTCTATTTGGTATATTTATTAGGTAGTGAGAATGTAAGATTTCTCCAT
CAGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK363796	1758	0.0	18 - 1758	100	1741 / 1741	CUST_36228_PI390587928 CUST_30438_PI390587928 CUST_36226_PI390587928	ABC01224 ABC01226 ABC01227
MLOC_36911.1	1617	0.0	1 - 1378	99	1376 / 1379	CUST_36228_PI390587928 CUST_30438_PI390587928	ABC01224 ABC01226 ABC01227
AK252300.1	1681	8e-122	18 - 255	100	238 / 238	CUST_30438_PI390587928 CUST_36228_PI390587928	ABC01224 ABC01226 ABC01227
MLOC_36911.2	1808	1e-120	1334 - 1569	100	236 / 236	CUST_30438_PI390587928 CUST_36228_PI390587928	ABC01224 ABC01226 ABC01227
MLOC_36911.3	1310	1e-120	1055 - 1290	100	236 / 236	CUST_30438_PI390587928 CUST_36228_PI390587928	ABC01224 ABC01226 ABC01227
MLOC_36911.4	1298	1e-120	1045 - 1280	100	236 / 236	CUST_36228_PI390587928 CUST_30438_PI390587928	ABC01224 ABC01226 ABC01227
AK251216.1	978	5e-104	444 - 649	100	206 / 206	None	ABC01226 ABC01227
AK372991	1405	1e-75	252 - 1066	73	603 / 823	CUST_11581_PI390587928	ABC01227