- Probe CUST_36228_PI390587928
- Source Contig U35_1932
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36228_PI390587928 | Hv_44K_v2 | TCTGATCTCCTGAGGCTCTTTGAATATGGTGGATATCCTCCTCAGTCCAACTATCTTTTC | 650 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.188 | 0.451 | 1.482 | 2.238 | 0.974 | 1.122 |
| Raw | 20.533 | 77.012 | 219.530 | 530.523 | 80.911 | 101.011 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252300.1 | 1681 | 2e-24 | 668 - 727 | 100 | 60 / 60 | plus | ABC01224 ABC01226 ABC01227 |
| MLOC | AK363796 | 1758 | 2e-24 | 477 - 536 | 100 | 60 / 60 | plus | ABC01224 ABC01226 ABC01227 |
| MLOC | MLOC_36911.4 | 1298 | 2e-24 | 572 - 631 | 100 | 60 / 60 | minus | ABC01224 ABC01226 ABC01227 |
| MLOC | MLOC_36911.3 | 1310 | 2e-24 | 582 - 641 | 100 | 60 / 60 | minus | ABC01224 ABC01226 ABC01227 |
| MLOC | MLOC_36911.1 | 1617 | 2e-24 | 861 - 920 | 100 | 60 / 60 | minus | ABC01224 ABC01226 ABC01227 |
| MLOC | MLOC_36911.2 | 1808 | 2e-24 | 861 - 920 | 100 | 60 / 60 | minus | ABC01224 ABC01226 ABC01227 |
| JLOC1 | JLOC1_23828.2 | 1884 | 8e-25 | 553 - 612 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23828.1 | 1748 | 8e-25 | 664 - 723 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01227 | 1760 | 3e-25 | 460 - 519 | 100 | 60 / 60 | plus | ABC01227 |
| Harvest21 | ABC01226 | 1937 | 3e-25 | 1878 - 1937 | 100 | 60 / 60 | plus | ABC01226 |
| Harvest35 | U35_29249 | 611 | 3e-25 | 492 - 551 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1933 | 1190 | 3e-25 | 460 - 519 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1932 | 710 | 3e-25 | 651 - 710 | 100 | 60 / 60 | plus |
Contig Sequence (710 bp)
>U35_1932 710 Hv_44K_v2 GGAGAGAGAAAGTGACAGAGAGAGGTAGAGAGAGAGGGGGAGAGGGGGGAGAGGAGACCC TGACCAATGCCAAGAACAAGAAGAGATCAGTGAGAAGGCCAGGCGAAAATCCCCACCGGG CGAGAGGAGACGACCACCGGCCTCCTCCGAGAACAAGAGCAAGAACAAGAAGGAATCCAT CCCGGAGCATCCACGAGGGAATAAAGCCGGAAAGGCAGGCCGAGGAGGAGAAAAAAAGGT ACCTTTGGTCCGTCGGACCCTCCCGGCACAAACAGTGATCATCACGAGCCCGCCGCAGCC GCCCCCAATCCCCACCAGAAGAGCGAGATTTGCTCGATCTGTGCTTGATTCCTTGTAGTA TCTTTTTTCGGCTGCTGCGGGGACAGCTTTGCTTTCCTTCTTGTTTTGACTGTCGCCGTT GTTGAGAAGCTCTTCCGGCGATGGAGAAGGGGATGGATCCGGCGCTGCTGGACAACATCA TCGCCAGGCTGCTGGAGGTGAAGAGCCTCAAGCCCGGGAAGAACGCGCAGCTGTCCGAGT CGGAGATCAAGCAGCTCTGCGCCGCCTCCAAGGAGATCTTCCTCGCGCAGCCCAACCTCC TGGAGCTCGAGGCCCCCATCAAAATCTGCGGTGATGTTCATGGTCAATATTCTGATCTCC TGAGGCTCTTTGAATATGGTGGATATCCTCCTCAGTCCAACTATCTTTTC
Homology of Contig U35_1932 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |