barSeed - Barley Seed Development Database

Probe ABC00825

Source Contig ABC00825

barSeed

Links

Affymetrix Source Sequence (762 bp)

>ABC00825 762
GCACGAGGTCAAAACATTTAATGATGCCCTGGACACAACACAGACAATCATTTGGAATGG
ACCAATGGGTGTCTTTGAATTTGACAAGTTTGCAGTAGGAACGGAGGCTGTTGCAAAGAA
GTTGGCCGAGCTTAGCAAAAAGGGGTTTTCGACACAGGAGATGGTCGTTTTATCTGGAGC
TCACACAATTGGGGGTAAAGGATTTGGGAATCCAAATGCTTTTGATAACGCCTATTTCAA
AGTACTCCTTGAGAAGCCACGGCCGACTTCATCTGGCATGCCGATAGGGCTGCCCACGGA
CTGGGCACTCACTGAAGATGATGAATGCTTGAGGTGGATCAACATCTATGCGGAGGACCA
GGATAAATTTTTCGCCGATTTCAGAGATGCATATACCAAGCTTGTAAACAGTGGAGCCTC
GTGGAGAACAACTTAGCTAGAATTACCTAGTTTTTTCGTCGAAATGGAGGTGTCACCCTA
GCCTCTACAGGATCGATGCACGCAACTGTAGAAGTTTTGCTACATGTGTAAGATTCGTGC
AAATTTTGCTCACAGCATATCCTTGCCCGTTCTGTAGTGATTCACTGCTGCCCTATCTCC
CGCTCGTTGTTGCCAAAACGCCAAGATACTTGTAGCTATGAAATAGTGTTACTGCACCCA
ACAAAATTTGTGTTAAGTTAGCAGTTAAATACATAATATTCAAGTCAGATTAATATACGG
TNNANAAAAAAAAAANAAANNNAANNANAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_55370.1	1466	0.0	58 - 644	100	587 / 587	CUST_13610_PI390587928 CUST_9747_PI390587928	ABC00825 ABC00991
MLOC_55370.2	1583	0.0	26 - 596	100	571 / 571	CUST_13610_PI390587928	ABC00825 ABC00991
MLOC_55370.3	1640	0.0	1 - 534	100	534 / 534	CUST_13610_PI390587928	ABC00825 ABC00991
MLOC_55370.4	1200	0.0	1 - 483	100	483 / 483	None	ABC00825 ABC00991
AK248705.1	1648	5e-66	1170 - 1306	100	137 / 137	CUST_4647_PI390587928	ABC00048 ABC00825 ABC26878
MLOC_76055.1	1381	5e-66	279 - 415	100	137 / 137	CUST_4647_PI390587928	ABC00048 ABC00825