barSeed - Barley Seed Development Database

Probe CUST_4647_PI390587928

Source Contig U35_17

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4647_PI390587928	Hv_44K_v2	CTTGGGTCGTCCTAAGGGTGTTACTCCTAAGTTTAGCTTGGCTCCCCTTGTGCCCAGATT	456	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.339	1.220	1.501	1.473	0.769	0.544
Raw	222.844	252.177	346.571	499.742	97.337	75.969

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248705.1	1648	2e-24	449 - 508	100	60 / 60	plus	ABC00048 ABC00825 ABC26878
MLOC	MLOC_76055.1	1381	2e-24	1077 - 1136	100	60 / 60	minus	ABC00048 ABC00825
JLOC1	JLOC1_50731.1	1757	8e-25	234 - 293	100	60 / 60	plus
Harvest21	ABC00060	446	3e-25	63 - 122	100	60 / 60	minus
Harvest21	ABC00048	1771	3e-25	457 - 516	100	60 / 60	plus	ABC00048
Harvest35	U35_19	1646	3e-25	323 - 382	100	60 / 60	plus
Harvest35	U35_17	516	3e-25	457 - 516	100	60 / 60	plus

Contig Sequence (516 bp)

>U35_17 516 Hv_44K_v2
CTCCTCCTCACCACCACCACCCCACCCTCCTCCTCCTCCTCCCCTGATCCCGCTCCCAAT
GGCGTCCACCGCCGCGCAGCCCGCCGCCCTCGTCGCCCGCCGCGTCGCGTCCGCGGCCGC
GCCGCTGCGGCGCGCGGGGCTCGCGGCCGGGTGCCAGCCGGCGCGCTCGCTGGCGTTCGC
GGCCGGCGCCGACCCGCGCCTCGCGGTCCACGTCGCGTCACGCTGCCGGGCCGCCTCGGC
CGCGCGCGGGGCCCGCGCCGTCGCCACCATGGCCAAGAAGAGCGTCGGCGACCTCACCGC
CGCCGACCTCGAGGGCAAGCGCGTGCTCGTGCGGGCCGACCTCAACGTGCCGCTCGACGA
CAACCAGAACATCACCGACGACACCCGCATCCGCGCCGCCATCCCCACCATCAAGTACCT
CCTCACCAACGGCGCCAAGGTCATCCTCACCAGCCACTTGGGTCGTCCTAAGGGTGTTAC
TCCTAAGTTTAGCTTGGCTCCCCTTGTGCCCAGATT

Homology of Contig U35_17 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g41640.2	485	2e-51	protein\|phosphoglycerate kinase protein, putative, expressed
Brachypodium v1_2	Bradi2g21120.2	483	1e-52
Arabidopsis v10	None