Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU3Hr1G018200	95.5	+	+	3374	-159	Containing

Transcripts from Gene BART1_0-u18453

Transcript	Length(bp)	Description
BART1_0-u18453.001	1289	1289 bp MSTRG.18453.1 MSTRG.18453
BART1_0-u18453.002	1238	1238 bp MSTRG.18453.2 MSTRG.18453
BART1_0-u18453.003	1189	1189 bp MSTRG.18453.3 MSTRG.18453
BART1_0-u18453.004	1024	1024 bp MSTRG.18453.4 MSTRG.18453
BART1_0-u18453.005	1100	1100 bp MSTRG.18453.5 MSTRG.18453
BART1_0-u18453.006	1093	1093 bp MSTRG.18453.6 MSTRG.18453
BART1_0-u18453.007	999	999 bp MSTRG.18453.7 MSTRG.18453

Exon Structure of BART1_0-u18453

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os10g41730.1	+2	2e-94	283	143/179 (80%)	protein|expressed protein
TAIR PP10	AT5G43822 @ ARAPORT AT5G43822.1 @ TAIR	+2	2e-42	148	77/180 (43%)	Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17620830-17621868 FORWARD LENGTH=195
BRACH PP3	Bradi3g33790.2.p	+2	7e-109	319	156/179 (87%)	pacid=32818824 transcript=Bradi3g33790.2 locus=Bradi3g33790 ID=Bradi3g33790.2.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0016310	phosphorylation
GO:0016301	kinase activity

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons