- Transcript HORVU7Hr1G085150.8
- Transcript IDHORVU7Hr1G085150.8
- Gene IDHORVU7Hr1G085150
Barley RTD
Exon Structure of HORVU7Hr1G085150.8
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 514441144 | 514440967 | - |
| chr7H | 2 | 514442474 | 514442430 | - |
| chr7H | 3 | 514442603 | 514442556 | - |
| chr7H | 4 | 514442934 | 514442719 | - |
| chr7H | 5 | 514443079 | 514443015 | - |
| chr7H | 6 | 514443422 | 514443298 | - |
| chr7H | 7 | 514443642 | 514443512 | - |
| chr7H | 8 | 514444592 | 514444530 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g09250.2 | +1 | 2e-141 | 400 | 190/208 (91%) | protein|glyoxalase family protein, putative, expressed |
| TAIR PP10 | AT1G67280 @ ARAPORT AT1G67280.1 @ TAIR |
+1 | 2e-108 | 318 | 152/209 (73%) | Symbols: | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190547 REVERSE LENGTH=350 |
| BRACH PP3 | Bradi3g14960.1.p | +1 | 2e-143 | 405 | 192/208 (92%) | pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (871 bp)
>HORVU7Hr1G085150.8 871 150831_barley_pseudomolecules GAAGCCTCTAGACTGAGCTCCTCATCAGCGTGGGACGGATCTCTGCCGGATCGTATTTCC GGGGTGACAACAGGGATGGCTACCGGTAGCGAAGCTGGAAAGTCCGCCGAGGCCGTGCTG GAATGGCCTAAGCAGGACAAAAAGAGGATGCTGCATGCTGTTTACCGTGTGGGAGATCTT GACAAAACCATTAAGTGTTACACAGAATGCTTTGGGATGAAGCTGCTGAGGAAAAGAGAT GTCCCAGAAGAGAAGTACACCAATGCGTTTCTTGGGTTTGGACCTGAGGATACTAATTTT GCACTTGAGCTGACTTACAATTATGGTGTTGACAAGTACGACATTGGAGCGGGCTTTGGA CATTTTGCCATCGCAAATGAGGATGTGTACAAGCTGTCTGAGACAATTAAATCATCTGAT TGTTGTAAGATCACTCGTGAACCTGGTCCTGTCAAGGGAGGGTCCACTGTGATTGCCTTT GCACAAGACCCAGATGGTTACTTGTTTGAGCTTATCCAGAGGGGTCCGACGCCTGAGCCT CTCTGTCAAGTTATGCTTCGTGTTGGTGACCTTGATCGGGCTATCATGTTCTACGAGAAG GCCCTTGGGATGAAGCTTCTGAGGAAGAAGGATGTGCCTCAGTATAAGTACACCATTGCC ATGATGGGCTATGCTGAGGAGGACAAGACCACTGTTCTGGTGGACTACGCAGACTTCCTC AAGGAGCTGCACTGAAGATGAGCAGGCTCAGATGTTAGTGTCGTGAGGAGGAACCGTATG TAGCAATGGTCTGTGTGATGTAATAAAACAAACCTCATGTAGCAAATGGTCTGTGTGCGA TGTAATAAAAAGGCAGCCTCTTCCGCTCGAC