Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G085150.6

ChromosomeExonStartStopDirection
chr7H1514441144514440957-
chr7H2514442287514442135-
chr7H3514442413514442367-
chr7H4514443079514443064-
chr7H5514443422514443298-
chr7H6514443642514443512-
chr7H7514444592514444470-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g09250.3 +1 2e-54 173 80/87 (92%) protein|glyoxalase family protein, putative, expressed
TAIR PP10 AT1G67280 @ ARAPORT
AT1G67280.1 @ TAIR		 +2 1e-46 124 60/82 (73%) Symbols: | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190547 REVERSE LENGTH=350
BRACH PP3 Bradi3g14960.1.p +2 3e-57 164 81/83 (98%) pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (783 bp)

>HORVU7Hr1G085150.6 783 150831_barley_pseudomolecules
GAAGCCTCTAGACTGAGCTCCTCATCAGCGTGGGACGGATCTCTGCCGGATCGTATTTCC
GGGGTGAGCATCCCCAAATCCATCTCCTTCGTCCTCTCTTCCGCTTGCTTCCTTTACGCG
CCGGTGACAACAGGGATGGCTACCGGTAGCGAAGCTGGAAAGTCCGCCGAGGCCGTGCTG
GAATGGCCTAAGCAGGACAAAAAGAGGATGCTGCATGCTGTTTACCGTGTGGGAGATCTT
GACAAAACCATTAAGTGTTACACAGAATGCTTTGGGATGAAGCTGCTGAGGAAAAGAGAT
GTCCCAGAAGAGAAGTACACCAATGCGTTTCTTGGGTTTGGACCTGAGGATACTAATTTT
GCACTTGAGCTGACTTACAATTATGGTGTTGACAAACAACTATGGTGTCACGGAATATAA
CAAGGGCAATGCATATGCTCAGGTTGCTATTGGCACTGACGATGTGTACAAGAGCGCCGA
AGCAGTTGAGCTGGTTACCAAAGAACTAGGTGGAAAGATTCTAAGGCAGCCAGGGCCACT
ACCGGGGCTGAACACCAAAATCACCTCTTTCCTTGACCCAGATGGCTGGAAAGTGGTTCT
GGTGGACTACGCAGACTTCCTCAAGGAGCTGCACTGAAGATGAGCAGGCTCAGATGTTAG
TGTCGTGAGGAGGAACCGTATGTAGCAATGGTCTGTGTGATGTAATAAAACAAACCTCAT
GTAGCAAATGGTCTGTGTGCGATGTAATAAAAAGGCAGCCTCTTCCGCTCGACGAATAAA
AAT