- Transcript HORVU7Hr1G085150.4
- Transcript IDHORVU7Hr1G085150.4
- Gene IDHORVU7Hr1G085150
Barley RTD
Exon Structure of HORVU7Hr1G085150.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 514441144 | 514440927 | - |
| chr7H | 2 | 514442287 | 514442135 | - |
| chr7H | 3 | 514442474 | 514442367 | - |
| chr7H | 4 | 514442603 | 514442556 | - |
| chr7H | 5 | 514442934 | 514442719 | - |
| chr7H | 6 | 514443079 | 514443015 | - |
| chr7H | 7 | 514443427 | 514443298 | - |
| chr7H | 8 | 514443557 | 514443533 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g09250.2 | +2 | 3e-174 | 485 | 236/253 (93%) | protein|glyoxalase family protein, putative, expressed |
| TAIR PP10 | AT1G11840 @ ARAPORT AT1G11840.4 @ TAIR |
+2 | 6e-140 | 397 | 189/250 (76%) | Symbols: ATGLX1, GLX1 | glyoxalase I homolog | chr1:3996045-3997518 FORWARD LENGTH=283 |
| BRACH PP3 | Bradi3g14960.1.p | +2 | 5e-178 | 494 | 238/253 (94%) | pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (963 bp)
>HORVU7Hr1G085150.4 963 150831_barley_pseudomolecules TGCTGCATGCTGTTTACCGTGTGGGCATAGGTGTTACACAGAATGCTTTGGGATGAAGCT GCTGAGGAAAAGAGATGTCCCAGAAGAGAAGTACACCAATGCGTTTCTTGGGTTTGGACC TGAGGATACTAATTTTGCACTTGAGCTGACTTACAATTATGGTGTTGACAAGTACGACAT TGGAGCGGGCTTTGGACATTTTGCCATCGCAAATGAGGATGTGTACAAGCTGTCTGAGAC AATTAAATCATCTGATTGTTGTAAGATCACTCGTGAACCTGGTCCTGTCAAGGGAGGGTC CACTGTGATTGCCTTTGCACAAGACCCAGATGGTTACTTGTTTGAGCTTATCCAGAGGGG TCCGACGCCTGAGCCTCTCTGTCAAGTTATGCTTCGTGTTGGTGACCTTGATCGGGCTAT CATGTTCTACGAGAAGGCCCTTGGGATGAAGCTTCTGAGGAAGAAGGATGTGCCTCAGTA TAAGTACACCATTGCCATGATGGGCTATGCTGAGGAGGACAAGACCACTGTTCTGGAGTT GACATACAACTATGGTGTCACGGAATATAACAAGGGCAATGCATATGCTCAGGTTGCTAT TGGCACTGACGATGTGTACAAGAGCGCCGAAGCAGTTGAGCTGGTTACCAAAGAACTAGG TGGAAAGATTCTAAGGCAGCCAGGGCCACTACCGGGGCTGAACACCAAAATCACCTCTTT CCTTGACCCAGATGGCTGGAAAGTGGTTCTGGTGGACTACGCAGACTTCCTCAAGGAGCT GCACTGAAGATGAGCAGGCTCAGATGTTAGTGTCGTGAGGAGGAACCGTATGTAGCAATG GTCTGTGTGATGTAATAAAACAAACCTCATGTAGCAAATGGTCTGTGTGCGATGTAATAA AAAGGCAGCCTCTTCCGCTCGACGAATAAAAATAAAAGCAACTACCGCATGCCCATGCCG TCA