- Transcript HORVU7Hr1G085150.3
- Transcript IDHORVU7Hr1G085150.3
- Gene IDHORVU7Hr1G085150
Barley RTD
Exon Structure of HORVU7Hr1G085150.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 514441144 | 514440926 | - |
| chr7H | 2 | 514442287 | 514442135 | - |
| chr7H | 3 | 514442474 | 514442367 | - |
| chr7H | 4 | 514442603 | 514442556 | - |
| chr7H | 5 | 514442934 | 514442719 | - |
| chr7H | 6 | 514443079 | 514443013 | - |
| chr7H | 7 | 514443422 | 514443298 | - |
| chr7H | 8 | 514443642 | 514443512 | - |
| chr7H | 9 | 514444643 | 514444470 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g09250.2 | +3 | 5e-153 | 355 | 174/189 (92%) | protein|glyoxalase family protein, putative, expressed |
| TAIR PP10 | AT1G67280 @ ARAPORT AT1G67280.1 @ TAIR |
+3 | 2e-120 | 280 | 134/173 (77%) | Symbols: | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190547 REVERSE LENGTH=350 |
| BRACH PP3 | Bradi3g14960.1.p | +3 | 1e-157 | 363 | 176/189 (93%) | pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1241 bp)
>HORVU7Hr1G085150.3 1241 150831_barley_pseudomolecules CGTCGCCATCAACGCAATCATAAGTATCGGTGCCGGACTCTCTTCTCCTTGGAAGCCTCT AGACTGAGCTCCTCATCAGCGTGGGACGGATCTCTGCCGGATCGTATTTCCGGGGTGAGC ATCCCCAAATCCATCTCCTTCGTCCTCTCTTCCGCTTGCTTCCTTTACGCGCCGGTGACA ACAGGGATGGCTACCGGTAGCGAAGCTGGAAAGTCCGCCGAGGCCGTGCTGGAATGGCCT AAGCAGGACAAAAAGAGGATGCTGCATGCTGTTTACCGTGTGGGAGATCTTGACAAAACC ATTAAGTGTTACACAGAATGCTTTGGGATGAAGCTGCTGAGGAAAAGAGATGTCCCAGAA GAGAAGTACACCAATGCGTTTCTTGGGTTTGGACCTGAGGATACTAATTTTGCACTTGAG CTGACTTACAATTATGGTGTTGACAAGTACGACATTGGAGCGGGCTTTGGACATTTTGCC ATCGCAAATGAGGATGTGTGTACAAGCTGTCTGAGACAATTAAATCATCTGATTGTTGTA AGATCACTCGTGAACCTGGTCCTGTCAAGGGAGGGTCCACTGTGATTGCCTTTGCACAAG ACCCAGATGGTTACTTGTTTGAGCTTATCCAGAGGGGTCCGACGCCTGAGCCTCTCTGTC AAGTTATGCTTCGTGTTGGTGACCTTGATCGGGCTATCATGTTCTACGAGAAGGCCCTTG GGATGAAGCTTCTGAGGAAGAAGGATGTGCCTCAGTATAAGTACACCATTGCCATGATGG GCTATGCTGAGGAGGACAAGACCACTGTTCTGGAGTTGACATACAACTATGGTGTCACGG AATATAACAAGGGCAATGCATATGCTCAGGTTGCTATTGGCACTGACGATGTGTACAAGA GCGCCGAAGCAGTTGAGCTGGTTACCAAAGAACTAGGTGGAAAGATTCTAAGGCAGCCAG GGCCACTACCGGGGCTGAACACCAAAATCACCTCTTTCCTTGACCCAGATGGCTGGAAAG TGGTTCTGGTGGACTACGCAGACTTCCTCAAGGAGCTGCACTGAAGATGAGCAGGCTCAG ATGTTAGTGTCGTGAGGAGGAACCGTATGTAGCAATGGTCTGTGTGATGTAATAAAACAA ACCTCATGTAGCAAATGGTCTGTGTGCGATGTAATAAAAAGGCAGCCTCTTCCGCTCGAC GAATAAAAATAAAAGCAACTACCGCATGCCCATGCCGTCAT