Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G085150.12

ChromosomeExonStartStopDirection
chr7H1514442603514442574-
chr7H2514442934514442719-
chr7H3514443079514443011-
chr7H4514443422514443298-
chr7H5514443642514443512-
chr7H6514444749514444470-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g09250.2 +2 1e-94 206 96/104 (92%) protein|glyoxalase family protein, putative, expressed
TAIR PP10 AT1G67280 @ ARAPORT
AT1G67280.1 @ TAIR		 +2 1e-73 171 86/135 (64%) Symbols: | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190547 REVERSE LENGTH=350
BRACH PP3 Bradi3g14960.1.p +2 2e-96 212 100/104 (96%) pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (851 bp)

>HORVU7Hr1G085150.12 851 150831_barley_pseudomolecules
TTGTAACCTTGCTGGGCCAGGCCCATCCATGCCGACACGCGCCCACAGCCCATCTGGCCA
GCTTTAGTGGGAGGGATGCGCTTTTACAGCCTGTGAGGAGGTACCACGTCGCCATCAACG
CAATCATAAGTATCGGTGCCGGACTCTCTTCTCCTTGGAAGCCTCTAGACTGAGCTCCTC
ATCAGCGTGGGACGGATCTCTGCCGGATCGTATTTCCGGGGTGAGCATCCCCAAATCCAT
CTCCTTCGTCCTCTCTTCCGCTTGCTTCCTTTACGCGCCGGTGACAACAGGGATGGCTAC
CGGTAGCGAAGCTGGAAAGTCCGCCGAGGCCGTGCTGGAATGGCCTAAGCAGGACAAAAA
GAGGATGCTGCATGCTGTTTACCGTGTGGGAGATCTTGACAAAACCATTAAGTGTTACAC
AGAATGCTTTGGGATGAAGCTGCTGAGGAAAAGAGATGTCCCAGAAGAGAAGTACACCAA
TGCGTTTCTTGGGTTTGGACCTGAGGATACTAATTTTGCACTTGAGCTGACTTACAATTA
TGGTGTTGACAAGTACGACATTGGAGCGGGCTTTGGACATTTTGCCATCGCAAATGAGGA
TGTATGTGTACAAGCTGTCTGAGACAATTAAATCATCTGATTGTTGTAAGATCACTCGTG
AACCTGGTCCTGTCAAGGGAGGGTCCACTGTGATTGCCTTTGCACAAGACCCAGATGGTT
ACTTGTTTGAGCTTATCCAGAGGGGTCCGACGCCTGAGCCTCTCTGTCAAGTTATGCTTC
GTGTTGGTGACCTTGATCGGGCTATCATGTTCTACGAGAAGGCCCTTGGGATGAAGCTTC
TGAGGAAGAAG