- Transcript HORVU4Hr1G027260.8
- Transcript IDHORVU4Hr1G027260.8
- Gene IDHORVU4Hr1G027260
Barley RTD
Exon Structure of HORVU4Hr1G027260.8
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 166877905 | 166877788 | - |
| chr4H | 2 | 166878412 | 166878131 | - |
| chr4H | 3 | 166878985 | 166878513 | - |
| chr4H | 4 | 166879322 | 166879237 | - |
| chr4H | 5 | 166880213 | 166879812 | - |
| chr4H | 6 | 166885290 | 166880335 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g47970.1 | +1 | 0.0 | 785 | 374/417 (90%) | protein|AAA-type ATPase family protein, putative, expressed |
| TAIR PP10 | AT2G39730 @ ARAPORT AT2G39730.1 @ TAIR |
+1 | 0.0 | 755 | 362/460 (79%) | Symbols: RCA | rubisco activase | chr2:16570951-16573345 REVERSE LENGTH=474 |
| BRACH PP3 | Bradi4g09125.2.p | +1 | 0.0 | 910 | 432/467 (93%) | pacid=32783473 transcript=Bradi4g09125.2 locus=Bradi4g09125 ID=Bradi4g09125.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (6317 bp)
>HORVU4Hr1G027260.8 6317 150831_barley_pseudomolecules GCCAAGCTCCATCGATCGGCATCGCATCTGTACCTGCTAACCACTGCACCCCTCTCTTTT ATCCATATCAGCTCCATCCATCACTGACGATCGATCTCAGTCCACCTGCATCTGTAGGTG TACTAGTAGTACGCCGGCCTAATCCAGCTGAGAGCTGATCGAGCTAGCTTGCATATACCA CTGCACGTACGCACATCAAATTAATTAGAAACTACTGTAATTAAGTTATCAGCAGCGAGA AGAGAACGATCGATCAACACCATGGCTTCTGCTTTCTCGTCCACCGTTGGAGCTCCGGTA CGTATGACCTACACTTCCACGTACACTCGTGGTTCCTAATCCTTAATTCAGTGGACACAA CGTGTGTACGACAAAAAGAAAACTCACCGTCTCTCTAAATTAATTGACAGAGTTGCTACA CATTTTCAGGTCTGAATTGTTTCATTTTGTACAGTTTTTAATATAATTTGTGACCGTGTG ATCTTGCTTTGAGATTCGGACGCGACAAGCTGGGCCTCCTCTCTATGTGTTGACTCCGAC AAGGGCATCTCTTTCCTCACCCATGCCTTCCGGGGCTTAAAAAGACTGTCTATGGTCAGC CTGAGCGTTCGGGTATTTTGGTTATTTCGGTTCATGTGTAATTCGGGTATTAAAAAAATG GGAATCGGAATTTTTTATGTCAAAAAAATAACCGAACCCAAATTACCCAAAATTTTGGTT TGGGTAACTCGGGTACCCAAAAAACCCAAAATATTCAGAGCACACATTAAGTTTCGGCAT GAATAATTCAGATAGTGTGGGTGTTTTAGTTAGTTTGTGTAACATGTAAGTGTAATAATA ACATAAATAATTTGACTAGTATGAATAATTCGGGTAGTATGGGTATTTTGGGTTTTACAG ACTAGAACCTGAACCCTAACCCGAAAACCGAATAGCCAGGAAATGAGAACCAAACCTTAA CCCGATACCCATATTACCCGACAATTCGGGTATTTTGGTTCAGTTCGGGTTTGGGTAGCG GGTTAGGGTATCCAAACTCTCGGGTGAGTCTAGGGTGATGGGGTGGGCAGCGGATGGCTA GCCACCATGGGGCGAAGGCTATCAAATGAGGTCATTTGATCTCGGTTTGGGCATGACCTT GAATATTGAGTTAGCACGATAAAGATAATTTAGGCAATACTAATGGTTGTTTCATGATGG CGCGGATGAGAATGAACGGGAGGTGGTAGCGAGATTTTATTTAGGAGCAACTATTGTGAG GTTTATTAAATCACGATGCAAATTACAAATAGGGCGAGGTGAGGGTGGTGACGGGGAGTG TTGAGAAATGTGGGAAGCTAATGGTTACACTTTTTCGAAGCTATTGCGTGGAGGAGGAAG GGAAAGATAGAACCTCAAAAGTCTCGAGTGGAGGCACACGGTTGTCAAGCCCGTGTGTGA GAATNATAATATTAGAAACTAACTAGTGAAGTATGCTTCTCCTCATTCTTCATTAGTAAG AACTTTTGGCTGAATTAGTTACTCCCTCCGTCTCAGTGTATAGGTCATATTAGGTTGTGC ATCGTGATCAAAACGGAGAGGAAAACAAAAAAATATATTAATTTGCTAATTAATATCATT GCATGTAATGAATTAACCACTGCATGTCGTGCTAGTTAGTCGCAAGTCATTAAAAACATA CACGTTCCATGTCTCTTATTGGTTGATTCCTTTATCCATGTAAAAAAAAACAAAAAACAA GCAGAAAATTAATGCATCGTGCCTAAGTGTTTTGAGATTTTTTTTTCATAAGATGACTTA TAAACCAAGACGGAGGGAGTAGGTTGTTTTGTAATTCAATATGTCATTCAAGCCATGGGG CATCAACTTCAAGGCCCAGCATGCCGGGACGGGACGGATCTAAAAACTATTTTGACTCGT GGCAAAACATCATTAAAATAAGGGAGGTAAATGATGGAGAGTAACAAAAACGATTTAAGA GTGGTGTCACATTTTATCCAAATTCATTGAGTTTTAGCATTTCCTCCTAAAAGTTATTCA AATCGTATTGAAATTTCATATTTTGAGTAGGGTCCTAGGCCCCCACTCTCTTCAACACGG GCCCACCACTTCTGGTATTGTACCTTTGACCTTCCGCCCCTGTTCATCAGCTGGAGCTTT TGGATGGACTAATTAATTCTATATATATGCGGATGCAATTGAATAGCGAGTGAAGTCTGG AACTGCCCAAATGAAGGGTTGATATCTGCAAATTAAGCGTTCATCGTGGCAATTGCTATT GAAAGCAAGCAGCAAGTGAACCAACGTGCATGAATGTGATTGGGGCTGACTATGTCATAC TTGTGCAGGCGTCGACCCCGACCATCTTCCTGGGCAAGAAGGTGAAGAACTACTACCATG GTGGCAACAAGATGAAGAGCAGGGTGGTGAGGGTCATGGCGGCCAAAAAGGAACTTGACC AGGGCAAGCAGACCGATGCGGACCGGTGGAAGGGTCTGGCCTACGACATCTCGGACGACC AGCAGGACATCACTCGGGGGAAAGGCATCGTGGACTCCCTGTTCCAGGCCCCCATGGGCG ACGGCACCCACGAGGCCATCCTAAGCTCCTACGAGTACATCAGCCAGGGCCTGCGGAAGT ACGACTTCGACAACACCATGGACGGGCTGTACATCGCGCCGGCATTCATGGACAAGCTCA TCGTCCACCTCGCCAAGAACTTCATGACACTCCCCAACATCAAGGTTCCTCTCATCCTGG GTATCTGGGGAGGCAAGGGACAGGGCAAGTCGTTCCAGTGTGAGCTGGTGTTCGCCAAGA TGGGCATCAACCCCATCATGATGAGCGCCGGTGAGCTGGAGAGCGGCAACGCCGGCGAGC CGGCCAAGCTGATCCGGCAGAGGTACCGCGAGGCGGCCGACATTATCAACAAGGGCAAGA TGTGCTGCCTCTTCATCAACGACCTGGACGCCGGCGCGGGCCGGATGGGCGGGACGACGC AGTACACGGTGAACAACCAGATGGTGAACGCCACCCTGATGAACATCGCGGACGCGCCCA CCAACGTGCAGCTCCCGGGGATGTACAACAAGGAGGAGAACCCCCGCGTGCCCATCATCG TCACCGGCAACGACTTCTCGACGCTGTACGCTCCCCTGATCCGTGACGGGCGCATGGAGA AGTTCTACTGGGCGCCCACCCGCGAGGACCGCATCGGCGTGTGCAAGGGCATCTTCCGCA CCGACAACGTCCCGGACGAGGCCGTGGTGAGGCTGGTGGACACCTTCCCGGGGCAGTCCA TCGACTTCTTCGGCGCGCTGCGGGCACGGGTGTACGACGACGAGGTGCGCAAGTGGGTCG GCGAGATCGGCGTGGAGAACATCTCCAAGCGCCTCGTCAACTCCAGGGAGGGGCCGCCCA CGTTCGACCAGCCCAAGATGACCATAGAGAAGCTCATGGAGTACGGCCACATGCTGGTCC AGGAGCAGGAGAACGTCAAGCGTGTGCAGCTCGCCGACAAGTACCTCAGCGAGGCGGCGC TCGGCCAAGCCAACGACGACGCCATGAAGACCGGTGCCTTCTACGGCAAGTAGAAGGTCC TACTCTACTTAAGATGCATGCATGCACTATATATATGTTGGACTATTTTGGACCCGAAAT CCACTCAAACTTTTTGATTCATCGCCGCACAGGTAACCCAATTGTAAGTCTCTTCTTGAA AGAGAAAGGAATTGTATATGTTCTTAAATCGTCATTTTCCGCTTAATCATTTCTCCAATG GATGCAAGCTAGGGTCCCAAGTCCCAACAACCTATATATCTCTTGATATTAGCACTTGTC GGAAGATTAGCACATATGTGGAAATCATCTGAAGCTTGTTGATTAGGTACGAGTACTGTG GATGTGGGGGGTCATGACTCATCACATACATACATATTTTCCCTTTGACGGATTACGGAA ACCCCAATTTGCACCACAAAGTTGATTAACAAGGACAACATCACTAGAAGGTGTATTGGA CAAAGATTGTGCGAGCCAAACGGCTCGCATTCATCGTAATGATCAATTAATGGTCTGTAC TAGACCCAAACAATGAGAATACCAGCAGGGAACTTGAGCTAGGCAACACGAATTACATTT ACATGAAAACATTAGACACGTTCTATAATCTTTTCATCAAAGCAAAACTGCATGGCTACC TTTTCTCTTAATACGCTTCATTTTTTTTTACCGAAGTGGCAATATTTATTGGAGTAGACA AAAGTACAAACCCATGTGCTTGATGTCAACCAGGACTTGATTTGTGTGGTGCCAAATGAC ATCCCTAGCTTGATGGTTATCAACAAACCAGTATATGTATGGCAGCAACAAATTTGTGGT ACTTGGAACTAGAATACAATCTTGGGTGCCTCATCCAACAAGCAACGAGAGACCCTTTTT TTGTGGTTATGCAATGACATGGCTTGGCTAATAAACAAGATAGTATATACGGGCGACCGA GTGAAAGGAAAAAATGAAAGGCACGGAAGAAATGGGAGATGATTTGAGCATGAATGGTTA GATTCTGTGGCCGTGGAAGGCCATGGAATTGATGGCCAGCAGACGTATCTGCAGCTGCAG CTGCAGCGTTTGGTCTTGACGGTCCAAGTCATCCAACCGGCCGGCCAAGACGCTCAGAAC CCAATCTCCAGCGTGTGGCCTCTGGGGGATCGGGAGGCTGATCCACAAGCAGGGGTGTGT GTATGCCGCCTCCTCCTCCAAGCTCCCCACAGCAGAGCAGCAATATGCCAATCCACGTGT ATTTAAGGCGTCACATAGCTCGGCCTCTATACTTTGAGCAGCAGCAGTCATTCATCACTG ATCACCAGCACAGCCGCGCGCATCCACCGTTGCTAGCAAGGTCGACCAAGCAGCACAGAG ATGGCTGCTGCCTTCTCCTCCACCGTCGGGGCTCCGGCTTCTACGCCGACCAACTTCCTC GGGAAGAAGCTCAAGAAGCAGGTGACCTCGGCCGTGAACTACCATGGCAAGAGCTCCAAG GCCAACAGGTTCACAGTCATGGCAGCGGAGAACATCGACGAGAAGAGGAACACCGACAAG TGGAAGGGTCTTGCGTACGATATCTCCGACGACCAGCAGGACATCACCAGAGGGAAGGGC ATCGTGGACTCGCTCTTCCAGGCGCCCACGGGCGACGGCACCCACGAGGCCGTCCTCAGC TCCTACGAGTACGTCAGCCAGGGCCTGCGGAAGTACGACTTCGACAACACCATGGGAGGC TTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTCCATCTCTCCAAAAACTTCATG ACCCTGCCCAACATCAAGATCCCACTCATCTTGGGTATCTGGGGAGGCAAGGGTCAAGGA AAATCATTCCAGTGTGAGCTTGTGTTCGCCAAGATGGGCATCAACCCCATCATGATGAGT GCCGGAGAGCTGGAGAGTGGGAACGCTGGAGAGCCAGCCAAGCTCATCAGGCAGCGGTAC CGTGAGGCTGCAGACATGATCAAGAAGGGTAAGATGTGCTGCCTCTTCATCAACGATCTT GACGCTGGTGCGGGTAGGATGGGCGGAACCACGCAGTACACCGTCAACAACCAGATGGTG AACGCCACCCTGATGAACATCGCCGATGCCCCCACCAACGTGCAGCTCCCTGGCATGTAC AACAAGGAGGAGAACCCCCGTGTGCCCATCGTCGTCACCGGTAACGATTTCTCGACGCTC TACGCTCCTCTGATCCGTGATGGTCGTATGGAGAAGTTCTACTGGGCTCCCACCCGTGAC GACCGTATCGGTGTCTGCAAGGGTATCTTCCAGACCGACAATGTCAGTGACGAGTCTGTC GTCAAGATCGTCGACACCTTCCCAGGACAATCCATTGACTTTTTCGGTGCTCTGCGTGCT CGGGTGTACGACGATGAGGTGCGCAAGTGGGTCGGCTCTACCGGAATCGAGAACATTGGC AAGAGGCTGGTGAACTCGCGGGACGGGCCCGTGACCTTCGAGCAGCCAAAGATGACAGTC GAGAAGCTGCTAGAGTACGGGCACATGCTCGTCCAGGAGCAGGACAATGTCAAGCGTGTG CAGCTTGCTGACACCTACATGAGCCAGGCAGCTCTGGGTGATGCTAACCAGGATGCGATG AAGACTGGTTCCTTCTACGGTAAAGGAGCACAGCAAGGTACTTTGCCCGTGCCGGAAGGT TGCACCGACCAAAATGCCAAGAACTACGACCCAACGGCAAGGAGCGACGACGGCAGCTGC CTTTACACCTTTTAAGC