- Transcript HORVU4Hr1G027260.5
- Transcript IDHORVU4Hr1G027260.5
- Gene IDHORVU4Hr1G027260
Barley RTD
Exon Structure of HORVU4Hr1G027260.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 166877905 | 166877677 | - |
| chr4H | 2 | 166878412 | 166878081 | - |
| chr4H | 3 | 166878985 | 166878690 | - |
| chr4H | 4 | 166879322 | 166879237 | - |
| chr4H | 5 | 166880213 | 166879812 | - |
| chr4H | 6 | 166880449 | 166880335 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g47970.1 | +2 | 0.0 | 605 | 311/418 (74%) | protein|AAA-type ATPase family protein, putative, expressed |
| TAIR PP10 | AT2G39730 @ ARAPORT AT2G39730.2 @ TAIR |
+2 | 1e-167 | 480 | 255/423 (60%) | Symbols: RCA | rubisco activase | chr2:16571046-16573345 REVERSE LENGTH=446 |
| BRACH PP3 | Bradi4g09125.1.p | +2 | 0.0 | 655 | 332/430 (77%) | pacid=32783475 transcript=Bradi4g09125.1 locus=Bradi4g09125 ID=Bradi4g09125.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1460 bp)
>HORVU4Hr1G027260.5 1460 150831_barley_pseudomolecules CAGCAGTCATTCATCACTGATCACCAGCACAGCCGCGCGCATCCACCGTTGCTAGCAAGG TCGACCAAGCAGCACAGAGATGGCTGCTGCCTTCTCCTCCACCGTCGGGGCTCCGGCTTC TACGCCGACCAACTTCCTCGGGAAGAAGCTCAAGAAGCAGGTGACCTCGGCCGTGAACTA CCATGGCAAGAGCTCCAAGGCCAACAGGTTCACAGTCATGGCAGCGGAGAACATCGACGA GAAGAGGAACACCGACAAGTGGAAGGGTCTTGCGTACGATATCTCCGACGACCAGCAGGA CATCACCAGAGGGAAGGGCATCGTGGACTCGCTCTTCCAGGCGCCCACGGGCGACGGCAC CCACGAGGCCGTCCTCAGCTCCTACGAGTACGTCAGCCAGGGCCTGCGGAAGTACGACTT CGACAACACCATGGGAGGCTTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTTGTCCA TCTCTCCAAAAACTTCATGACCCTGCCCAACATCAAGATCCCACTCATCTTGGGTATCTG GGGAGGCAAGGGTCAAGGAAAATCATTCCAGTGTGAGCTTGTGTTCGCCAAGATGGGCAT CAACCCCATCATGATGAGTGCCGGAGAGCTGGAGAGTGGGAACGCTGGAGAGCCAGCCAA GCTCATCAGGCAGCGGTACCGTGAGGCTGCAGACATGATCAAGAAGGGTAAGATGTGCTG CCTCTTCATCAACGATCTTGACGCTGGTGCGGGTAGGATGGGCGGAACCACGCAGTACAC CGTCAACAACCAGATGGTGAACGCCACCCTGATGAACATCGCCGATGCCCCCACCAACGT GCAGCTCCCTGGCATGTACAACAAGGAGGAGAACCCCCGTGTGCCCATCGTCGTCACCGA CTTTTTCGGTGCTCTGCGTGCTCGGGTGTACGACGATGAGGTGCGCAAGTGGGTCGGCTC TACCGGAATCGAGAACATTGGCAAGAGGCTGGTGAACTCGCGGGACGGGCCCGTGACCTT CGAGCAGCCAAAGATGACAGTCGAGAAGCTGCTAGAGTACGGGCACATGCTCGTCCAGGA GCAGGACAATGTCAAGCGTGTGCAGCTTGCTGACACCTACATGAGCCAGGCAGCTCTGGG TGATGCTAACCAGGATGCGATGAAGACTGGTTCCTTCTACGGTTAGAAAATTCTCCATAC ACACCCACCATCTCTTGCTGCATAGGAGGAGGTAAAGGAGCACAGCAAGGTACTTTGCCC GTGCCGGAAGGTTGCACCGACCAAAATGCCAAGAACTACGACCCAACGGCAAGGAGCGAC GACGGCAGCTGCCTTTACACCTTTTAAGCATGCCACTTTTAATATCTGATGTTTTACCTA CCTAAGTCCGCATCGCATCCAAGCGATTGCTGGGCATGTTTTGTTAATATATCTCTAAAT ATATTGAGTATACCCATTTG