- Transcript HORVU4Hr1G027260.3
- Transcript IDHORVU4Hr1G027260.3
- Gene IDHORVU4Hr1G027260
Barley RTD
Exon Structure of HORVU4Hr1G027260.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 166877905 | 166877660 | - |
| chr4H | 2 | 166878412 | 166878131 | - |
| chr4H | 3 | 166878810 | 166878513 | - |
| chr4H | 4 | 166878985 | 166878970 | - |
| chr4H | 5 | 166879322 | 166879237 | - |
| chr4H | 6 | 166880213 | 166879812 | - |
| chr4H | 7 | 166880454 | 166880335 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g47970.1 | +1 | 0.0 | 653 | 322/417 (77%) | protein|AAA-type ATPase family protein, putative, expressed |
| TAIR PP10 | AT2G39730 @ ARAPORT AT2G39730.1 @ TAIR |
+1 | 0.0 | 621 | 310/460 (67%) | Symbols: RCA | rubisco activase | chr2:16570951-16573345 REVERSE LENGTH=474 |
| BRACH PP3 | Bradi4g09125.2.p | +1 | 0.0 | 775 | 380/467 (81%) | pacid=32783473 transcript=Bradi4g09125.2 locus=Bradi4g09125 ID=Bradi4g09125.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1450 bp)
>HORVU4Hr1G027260.3 1450 150831_barley_pseudomolecules AGCAGCAGCAGTCATTCATCACTGATCACCAGCACAGCCGCGCGCATCCACCGTTGCTAG CAAGGTCGACCAAGCAGCACAGAGATGGCTGCTGCCTTCTCCTCCACCGTCGGGGCTCCG GCTTCTACGCCGACCAACTTCCTCGGGAAGAAGCTCAAGAAGCAGGTGACCTCGGCCGTG AACTACCATGGCAAGAGCTCCAAGGCCAACAGGTTCACAGTCATGGCAGCGGAGAACATC GACGAGAAGAGGAACACCGACAAGTGGAAGGGTCTTGCGTACGATATCTCCGACGACCAG CAGGACATCACCAGAGGGAAGGGCATCGTGGACTCGCTCTTCCAGGCGCCCACGGGCGAC GGCACCCACGAGGCCGTCCTCAGCTCCTACGAGTACGTCAGCCAGGGCCTGCGGAAGTAC GACTTCGACAACACCATGGGAGGCTTCTACATCGCTCCTGCTTTCATGGACAAGCTTGTT GTCCATCTCTCCAAAAACTTCATGACCCTGCCCAACATCAAGATCCCACTCATCTTGGGT ATCTGGGGAGGCAAGGGTCAAGGAAAATCATTCCAGTGTGAGCTTGTGTTCGCCAAGATG GGCATCAACCCCATCATGATGAGTACCGTCAACAACCAGATGGTGAACGCCACCCTGATG AACATCGCCGATGCCCCCACCAACGTGCAGCTCCCTGGCATGTACAACAAGGAGGAGAAC CCCCGTGTGCCCATCGTCGTCACCGGTAACGATTTCTCGACGCTCTACGCTCCTCTGATC CGTGATGGTCGTATGGAGAAGTTCTACTGGGCTCCCACCCGTGACGACCGTATCGGTGTC TGCAAGGGTATCTTCCAGACCGACAATGTCAGTGACGAGTCTGTCGTCAAGATCGTCGAC ACCTTCCCAGGACAATCCATTGACTTTTTCGGTGCTCTGCGTGCTCGGGTGTACGACGAT GAGGTGCGCAAGTGGGTCGGCTCTACCGGAATCGAGAACATTGGCAAGAGGCTGGTGAAC TCGCGGGACGGGCCCGTGACCTTCGAGCAGCCAAAGATGACAGTCGAGAAGCTGCTAGAG TACGGGCACATGCTCGTCCAGGAGCAGGACAATGTCAAGCGTGTGCAGCTTGCTGACACC TACATGAGCCAGGCAGCTCTGGGTGATGCTAACCAGGATGCGATGAAGACTGGTTCCTTC TACGGTAAAGGAGCACAGCAAGGTACTTTGCCCGTGCCGGAAGGTTGCACCGACCAAAAT GCCAAGAACTACGACCCAACGGCAAGGAGCGACGACGGCAGCTGCCTTTACACCTTTTAA GCATGCCACTTTTAATATCTGATGTTTTACCTACCTAAGTCCGCATCGCATCCAAGCGAT TGCTGGGCATGTTTTGTTAATATATCTCTAAATATATTGAGTATACCCATTTGGCAAAGA CCAATACACC