- Transcript HORVU4Hr1G027260.20
- Transcript IDHORVU4Hr1G027260.20
- Gene IDHORVU4Hr1G027260
Barley RTD
Exon Structure of HORVU4Hr1G027260.20
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 166882942 | 166881698 | - |
| chr4H | 2 | 166883212 | 166883177 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g47970.1 | +1 | 0.0 | 753 | 362/423 (86%) | protein|AAA-type ATPase family protein, putative, expressed |
| TAIR PP10 | AT2G39730 @ ARAPORT AT2G39730.2 @ TAIR |
+1 | 0.0 | 701 | 338/429 (79%) | Symbols: RCA | rubisco activase | chr2:16571046-16573345 REVERSE LENGTH=446 |
| BRACH PP3 | Bradi4g09120.1.p | +1 | 0.0 | 784 | 381/431 (88%) | pacid=32788533 transcript=Bradi4g09120.1 locus=Bradi4g09120 ID=Bradi4g09120.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1281 bp)
>HORVU4Hr1G027260.20 1281 150831_barley_pseudomolecules GCCCCCACTCTCTTCAACACGGGCCCACCACTTCTGGCGTCGACCCCGACCATCTTCCTG GGCAAGAAGGTGAAGAACTACTACCATGGTGGCAACAAGATGAAGAGCAGGGTGGTGAGG GTCATGGCGGCCAAAAAGGAACTTGACCAGGGCAAGCAGACCGATGCGGACCGGTGGAAG GGTCTGGCCTACGACATCTCGGACGACCAGCAGGACATCACTCGGGGGAAAGGCATCGTG GACTCCCTGTTCCAGGCCCCCATGGGCGACGGCACCCACGAGGCCATCCTAAGCTCCTAC GAGTACATCAGCCAGGGCCTGCGGAAGTACGACTTCGACAACACCATGGACGGGCTGTAC ATCGCGCCGGCATTCATGGACAAGCTCATCGTCCACCTCGCCAAGAACTTCATGACACTC CCCAACATCAAGGTTCCTCTCATCCTGGGTATCTGGGGAGGCAAGGGACAGGGCAAGTCG TTCCAGTGTGAGCTGGTGTTCGCCAAGATGGGCATCAACCCCATCATGATGAGCGCCGGT GAGCTGGAGAGCGGCAACGCCGGCGAGCCGGCCAAGCTGATCCGGCAGAGGTACCGCGAG GCGGCCGACATTATCAACAAGGGCAAGATGTGCTGCCTCTTCATCAACGACCTGGACGCC GGCGCGGGCCGGATGGGCGGGACGACGCAGTACACGGTGAACAACCAGATGGTGAACGCC ACCCTGATGAACATCGCGGACGCGCCCACCAACGTGCAGCTCCCGGGGATGTACAACAAG GAGGAGAACCCCCGCGTGCCCATCATCGTCACCGGCAACGACTTCTCGACGCTGTACGCT CCCCTGATCCGTGACGGGCGCATGGAGAAGTTCTACTGGGCGCCCACCCGCGAGGACCGC ATCGGCGTGTGCAAGGGCATCTTCCGCACCGACAACGTCCCGGACGAGGCCGTGGTGAGG CTGGTGGACACCTTCCCGGGGCAGTCCATCGACTTCTTCGGCGCGCTGCGGGCACGGGTG TACGACGACGAGGTGCGCAAGTGGGTCGGCGAGATCGGCGTGGAGAACATCTCCAAGCGC CTCGTCAACTCCAGGGAGGGGCCGCCCACGTTCGACCAGCCCAAGATGACCATAGAGAAG CTCATGGAGTACGGCCACATGCTGGTCCAGGAGCAGGAGAACGTCAAGCGTGTGCAGCTC GCCGACAAGTACCTCAGCGAGGCGGCGCTCGGCCAAGCCAACGACGACGCCATGAAGACC GGTGCCTTCTACGGCAAGTAG