- Transcript HORVU4Hr1G027260.16
- Transcript IDHORVU4Hr1G027260.16
- Gene IDHORVU4Hr1G027260
Barley RTD
Exon Structure of HORVU4Hr1G027260.16
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 166882076 | 166881533 | - |
| chr4H | 2 | 166882942 | 166882245 | - |
| chr4H | 3 | 166885264 | 166884994 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g47970.1 | +2 | 0.0 | 563 | 293/419 (70%) | protein|AAA-type ATPase family protein, putative, expressed |
| TAIR PP10 | AT2G39730 @ ARAPORT AT2G39730.2 @ TAIR |
+2 | 0.0 | 559 | 287/433 (66%) | Symbols: RCA | rubisco activase | chr2:16571046-16573345 REVERSE LENGTH=446 |
| BRACH PP3 | Bradi4g09125.2.p | +2 | 0.0 | 606 | 307/432 (71%) | pacid=32783473 transcript=Bradi4g09125.2 locus=Bradi4g09125 ID=Bradi4g09125.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1513 bp)
>HORVU4Hr1G027260.16 1513 150831_barley_pseudomolecules TCTGTACCTGCTAACCACTGCACCCCTCTCTTTTATCCATATCAGCTCCATCCATCACTG ACGATCGATCTCAGTCCACCTGCATCTGTAGGTGTACTAGTAGTACGCCGGCCTAATCCA GCTGAGAGCTGATCGAGCTAGCTTGCATATACCACTGCACGTACGCACATCAAATTAATT AGAAACTACTGTAATTAAGTTATCAGCAGCGAGAAGAGAACGATCGATCAACACCATGGC TTCTGCTTTCTCGTCCACCGTTGGAGCTCCGGCGTCGACCCCGACCATCTTCCTGGGCAA GAAGGTGAAGAACTACTACCATGGTGGCAACAAGATGAAGAGCAGGGTGGTGAGGGTCAT GGCGGCCAAAAAGGAACTTGACCAGGGCAAGCAGACCGATGCGGACCGGTGGAAGGGTCT GGCCTACGACATCTCGGACGACCAGCAGGACATCACTCGGGGGAAAGGCATCGTGGACTC CCTGTTCCAGGCCCCCATGGGCGACGGCACCCACGAGGCCATCCTAAGCTCCTACGAGTA CATCAGCCAGGGCCTGCGGAAGTACGACTTCGACAACACCATGGACGGGCTGTACATCGC GCCGGCATTCATGGACAAGCTCATCGTCCACCTCGCCAAGAACTTCATGACACTCCCCAA CATCAAGGTTCCTCTCATCCTGGGTATCTGGGGAGGCAAGGGACAGGGCAAGTCGTTCCA GTGTGAGCTGGTGTTCGCCAAGATGGGCATCAACCCCATCATGATGAGCGCCGGTGAGCT GGAGAGCGGCAACGCCGGCGAGCCGGCCAAGCTGATCCGGCAGAGGTACCGCGAGGCGGC CGACATTATCAACAAGGGCAAGATGTGCTGCCTCTTCATCAACGACCTGGACGCCGGCGC GGGCCGGATGGGCGGGACGACGCAGTACACGGTGAACAACCAGATGGTGAACGCCACCCT GATGAACATCGGCGTGTGCAAGGGCATCTTCCGCACCGACAACGTCCCGGACGAGGCCGT GGTGAGGCTGGTGGACACCTTCCCGGGGCAGTCCATCGACTTCTTCGGCGCGCTGCGGGC ACGGGTGTACGACGACGAGGTGCGCAAGTGGGTCGGCGAGATCGGCGTGGAGAACATCTC CAAGCGCCTCGTCAACTCCAGGGAGGGGCCGCCCACGTTCGACCAGCCCAAGATGACCAT AGAGAAGCTCATGGAGTACGGCCACATGCTGGTCCAGGAGCAGGAGAACGTCAAGCGTGT GCAGCTCGCCGACAAGTACCTCAGCGAGGCGGCGCTCGGCCAAGCCAACGACGACGCCAT GAAGACCGGTGCCTTCTACGGCAAGTAGAAGGTCCTACTCTACTTAAGATGCATGCATGC ACTATATATATGTTGGACTATTTTGGACCCGAAATCCACTCAAACTTTTTGATTCATCGC CGCACAGGTAACCCAATTGTAAGTCTCTTCTTGAAAGAGAAAGGAATTGTATATGTTCTT AAATCGTCATTTT