- Transcript HORVU4Hr1G027260.15
- Transcript IDHORVU4Hr1G027260.15
- Gene IDHORVU4Hr1G027260
Barley RTD
Exon Structure of HORVU4Hr1G027260.15
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 166882348 | 166881533 | - |
| chr4H | 2 | 166882942 | 166882820 | - |
| chr4H | 3 | 166885264 | 166884994 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g47970.1 | +2 | 2e-145 | 422 | 197/229 (86%) | protein|AAA-type ATPase family protein, putative, expressed |
| TAIR PP10 | AT2G39730 @ ARAPORT AT2G39730.3 @ TAIR |
+2 | 2e-136 | 397 | 190/233 (82%) | Symbols: RCA | rubisco activase | chr2:16571174-16573345 REVERSE LENGTH=441 |
| BRACH PP3 | Bradi4g09120.1.p | +2 | 2e-155 | 446 | 211/230 (92%) | pacid=32788533 transcript=Bradi4g09120.1 locus=Bradi4g09120 ID=Bradi4g09120.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1210 bp)
>HORVU4Hr1G027260.15 1210 150831_barley_pseudomolecules TCTGTACCTGCTAACCACTGCACCCCTCTCTTTTATCCATATCAGCTCCATCCATCACTG ACGATCGATCTCAGTCCACCTGCATCTGTAGGTGTACTAGTAGTACGCCGGCCTAATCCA GCTGAGAGCTGATCGAGCTAGCTTGCATATACCACTGCACGTACGCACATCAAATTAATT AGAAACTACTGTAATTAAGTTATCAGCAGCGAGAAGAGAACGATCGATCAACACCATGGC TTCTGCTTTCTCGTCCACCGTTGGAGCTCCGGCGTCGACCCCGACCATCTTCCTGGGCAA GAAGGTGAAGAACTACTACCATGGTGGCAACAAGATGAAGAGCAGGGTGGTGAGGGTCAT GGCGGCCAAAAAGGAACTTGACCAGGGCAAGCAGTGCTGCCTCTTCATCAACGACCTGGA CGCCGGCGCGGGCCGGATGGGCGGGACGACGCAGTACACGGTGAACAACCAGATGGTGAA CGCCACCCTGATGAACATCGCGGACGCGCCCACCAACGTGCAGCTCCCGGGGATGTACAA CAAGGAGGAGAACCCCCGCGTGCCCATCATCGTCACCGGCAACGACTTCTCGACGCTGTA CGCTCCCCTGATCCGTGACGGGCGCATGGAGAAGTTCTACTGGGCGCCCACCCGCGAGGA CCGCATCGGCGTGTGCAAGGGCATCTTCCGCACCGACAACGTCCCGGACGAGGCCGTGGT GAGGCTGGTGGACACCTTCCCGGGGCAGTCCATCGACTTCTTCGGCGCGCTGCGGGCACG GGTGTACGACGACGAGGTGCGCAAGTGGGTCGGCGAGATCGGCGTGGAGAACATCTCCAA GCGCCTCGTCAACTCCAGGGAGGGGCCGCCCACGTTCGACCAGCCCAAGATGACCATAGA GAAGCTCATGGAGTACGGCCACATGCTGGTCCAGGAGCAGGAGAACGTCAAGCGTGTGCA GCTCGCCGACAAGTACCTCAGCGAGGCGGCGCTCGGCCAAGCCAACGACGACGCCATGAA GACCGGTGCCTTCTACGGCAAGTAGAAGGTCCTACTCTACTTAAGATGCATGCATGCACT ATATATATGTTGGACTATTTTGGACCCGAAATCCACTCAAACTTTTTGATTCATCGCCGC ACAGGTAACCCAATTGTAAGTCTCTTCTTGAAAGAGAAAGGAATTGTATATGTTCTTAAA TCGTCATTTT