- Transcript HORVU4Hr1G027260.13
- Transcript IDHORVU4Hr1G027260.13
- Gene IDHORVU4Hr1G027260
Barley RTD
Exon Structure of HORVU4Hr1G027260.13
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 166885350 | 166881366 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g47970.1 | +3 | 0.0 | 754 | 363/420 (86%) | protein|AAA-type ATPase family protein, putative, expressed |
| TAIR PP10 | AT2G39730 @ ARAPORT AT2G39730.3 @ TAIR |
+3 | 0.0 | 699 | 339/435 (78%) | Symbols: RCA | rubisco activase | chr2:16571174-16573345 REVERSE LENGTH=441 |
| BRACH PP3 | Bradi4g09120.1.p | +3 | 0.0 | 785 | 379/425 (89%) | pacid=32788533 transcript=Bradi4g09120.1 locus=Bradi4g09120 ID=Bradi4g09120.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3985 bp)
>HORVU4Hr1G027260.13 3985 150831_barley_pseudomolecules CAGTCGTGTTGGACGCTTGCTCCATGGCCATCTGTCCATGCACCTATATAAGACGCCATG GCCAAGCTCCATCGATCGGCATCGCATCTGTACCTGCTAACCACTGCACCCCTCTCTTTT ATCCATATCAGCTCCATCCATCACTGACGATCGATCTCAGTCCACCTGCATCTGTAGGTG TACTAGTAGTACGCCGGCCTAATCCAGCTGAGAGCTGATCGAGCTAGCTTGCATATACCA CTGCACGTACGCACATCAAATTAATTAGAAACTACTGTAATTAAGTTATCAGCAGCGAGA AGAGAACGATCGATCAACACCATGGCTTCTGCTTTCTCGTCCACCGTTGGAGCTCCGGTA CGTATGACCTACACTTCCACGTACACTCGTGGTTCCTAATCCTTAATTCAGTGGACACAA CGTGTGTACGACAAAAAGAAAACTCACCGTCTCTCTAAATTAATTGACAGAGTTGCTACA CATTTTCAGGTCTGAATTGTTTCATTTTGTACAGTTTTTAATATAATTTGTGACCGTGTG ATCTTGCTTTGAGATTCGGACGCGACAAGCTGGGCCTCCTCTCTATGTGTTGACTCCGAC AAGGGCATCTCTTTCCTCACCCATGCCTTCCGGGGCTTAAAAAGACTGTCTATGGTCAGC CTGAGCGTTCGGGTATTTTGGTTATTTCGGTTCATGTGTAATTCGGGTATTAAAAAAATG GGAATCGGAATTTTTTATGTCAAAAAAATAACCGAACCCAAATTACCCAAAATTTTGGTT TGGGTAACTCGGGTACCCAAAAAACCCAAAATATTCAGAGCACACATTAAGTTTCGGCAT GAATAATTCAGATAGTGTGGGTGTTTTAGTTAGTTTGTGTAACATGTAAGTGTAATAATA ACATAAATAATTTGACTAGTATGAATAATTCGGGTAGTATGGGTATTTTGGGTTTTACAG ACTAGAACCTGAACCCTAACCCGAAAACCGAATAGCCAGGAAATGAGAACCAAACCTTAA CCCGATACCCATATTACCCGACAATTCGGGTATTTTGGTTCAGTTCGGGTTTGGGTAGCG GGTTAGGGTATCCAAACTCTCGGGTGAGTCTAGGGTGATGGGGTGGGCAGCGGATGGCTA GCCACCATGGGGCGAAGGCTATCAAATGAGGTCATTTGATCTCGGTTTGGGCATGACCTT GAATATTGAGTTAGCACGATAAAGATAATTTAGGCAATACTAATGGTTGTTTCATGATGG CGCGGATGAGAATGAACGGGAGGTGGTAGCGAGATTTTATTTAGGAGCAACTATTGTGAG GTTTATTAAATCACGATGCAAATTACAAATAGGGCGAGGTGAGGGTGGTGACGGGGAGTG TTGAGAAATGTGGGAAGCTAATGGTTACACTTTTTCGAAGCTATTGCGTGGAGGAGGAAG GGAAAGATAGAACCTCAAAAGTCTCGAGTGGAGGCACACGGTTGTCAAGCCCGTGTGTGA GAATNATAATATTAGAAACTAACTAGTGAAGTATGCTTCTCCTCATTCTTCATTAGTAAG AACTTTTGGCTGAATTAGTTACTCCCTCCGTCTCAGTGTATAGGTCATATTAGGTTGTGC ATCGTGATCAAAACGGAGAGGAAAACAAAAAAATATATTAATTTGCTAATTAATATCATT GCATGTAATGAATTAACCACTGCATGTCGTGCTAGTTAGTCGCAAGTCATTAAAAACATA CACGTTCCATGTCTCTTATTGGTTGATTCCTTTATCCATGTAAAAAAAAACAAAAAACAA GCAGAAAATTAATGCATCGTGCCTAAGTGTTTTGAGATTTTTTTTTCATAAGATGACTTA TAAACCAAGACGGAGGGAGTAGGTTGTTTTGTAATTCAATATGTCATTCAAGCCATGGGG CATCAACTTCAAGGCCCAGCATGCCGGGACGGGACGGATCTAAAAACTATTTTGACTCGT GGCAAAACATCATTAAAATAAGGGAGGTAAATGATGGAGAGTAACAAAAACGATTTAAGA GTGGTGTCACATTTTATCCAAATTCATTGAGTTTTAGCATTTCCTCCTAAAAGTTATTCA AATCGTATTGAAATTTCATATTTTGAGTAGGGTCCTAGGCCCCCACTCTCTTCAACACGG GCCCACCACTTCTGGTATTGTACCTTTGACCTTCCGCCCCTGTTCATCAGCTGGAGCTTT TGGATGGACTAATTAATTCTATATATATGCGGATGCAATTGAATAGCGAGTGAAGTCTGG AACTGCCCAAATGAAGGGTTGATATCTGCAAATTAAGCGTTCATCGTGGCAATTGCTATT GAAAGCAAGCAGCAAGTGAACCAACGTGCATGAATGTGATTGGGGCTGACTATGTCATAC TTGTGCAGGCGTCGACCCCGACCATCTTCCTGGGCAAGAAGGTGAAGAACTACTACCATG GTGGCAACAAGATGAAGAGCAGGGTGGTGAGGGTCATGGCGGCCAAAAAGGAACTTGACC AGGGCAAGCAGACCGATGCGGACCGGTGGAAGGGTCTGGCCTACGACATCTCGGACGACC AGCAGGACATCACTCGGGGGAAAGGCATCGTGGACTCCCTGTTCCAGGCCCCCATGGGCG ACGGCACCCACGAGGCCATCCTAAGCTCCTACGAGTACATCAGCCAGGGCCTGCGGAAGT ACGACTTCGACAACACCATGGACGGGCTGTACATCGCGCCGGCATTCATGGACAAGCTCA TCGTCCACCTCGCCAAGAACTTCATGACACTCCCCAACATCAAGGTTCCTCTCATCCTGG GTATCTGGGGAGGCAAGGGACAGGGCAAGTCGTTCCAGTGTGAGCTGGTGTTCGCCAAGA TGGGCATCAACCCCATCATGATGAGCGCCGGTGAGCTGGAGAGCGGCAACGCCGGCGAGC CGGCCAAGCTGATCCGGCAGAGGTACCGCGAGGCGGCCGACATTATCAACAAGGGCAAGA TGTGCTGCCTCTTCATCAACGACCTGGACGCCGGCGCGGGCCGGATGGGCGGGACGACGC AGTACACGGTGAACAACCAGATGGTGAACGCCACCCTGATGAACATCGCGGACGCGCCCA CCAACGTGCAGCTCCCGGGGATGTACAACAAGGAGGAGAACCCCCGCGTGCCCATCATCG TCACCGGCAACGACTTCTCGACGCTGTACGCTCCCCTGATCCGTGACGGGCGCATGGAGA AGTTCTACTGGGCGCCCACCCGCGAGGACCGCATCGGCGTGTGCAAGGGCATCTTCCGCA CCGACAACGTCCCGGACGAGGCCGTGGTGAGGCTGGTGGACACCTTCCCGGGGCAGTCCA TCGACTTCTTCGGCGCGCTGCGGGCACGGGTGTACGACGACGAGGTGCGCAAGTGGGTCG GCGAGATCGGCGTGGAGAACATCTCCAAGCGCCTCGTCAACTCCAGGGAGGGGCCGCCCA CGTTCGACCAGCCCAAGATGACCATAGAGAAGCTCATGGAGTACGGCCACATGCTGGTCC AGGAGCAGGAGAACGTCAAGCGTGTGCAGCTCGCCGACAAGTACCTCAGCGAGGCGGCGC TCGGCCAAGCCAACGACGACGCCATGAAGACCGGTGCCTTCTACGGCAAGTAGAAGGTCC TACTCTACTTAAGATGCATGCATGCACTATATATATGTTGGACTATTTTGGACCCGAAAT CCACTCAAACTTTTTGATTCATCGCCGCACAGGTAACCCAATTGTAAGTCTCTTCTTGAA AGAGAAAGGAATTGTATATGTTCTTAAATCGTCATTTTCCGCTTAATCATTTCTCCAATG GATGCAAGCTAGGGTCCCAAGTCCCAACAACCTATATATCTCTTGATATTAGCACTTGTC GGAAGATTAGCACATATGTGGAAATCATCTGAAGCTTGTTGATTAGGTACGAGTACTGTG GATGTGGGGGGTCATGACTCATCAC