- Transcript HORVU4Hr1G027260.10
- Transcript IDHORVU4Hr1G027260.10
- Gene IDHORVU4Hr1G027260
Barley RTD
Exon Structure of HORVU4Hr1G027260.10
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 166877905 | 166877796 | - |
| chr4H | 2 | 166878227 | 166878131 | - |
| chr4H | 3 | 166878412 | 166878321 | - |
| chr4H | 4 | 166880283 | 166880279 | - |
| chr4H | 5 | 166882562 | 166882028 | - |
| chr4H | 6 | 166882942 | 166882663 | - |
| chr4H | 7 | 166883088 | 166883054 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g47970.1 | +2 | 4e-160 | 363 | 172/177 (97%) | protein|AAA-type ATPase family protein, putative, expressed |
| TAIR PP10 | AT2G39730 @ ARAPORT AT2G39730.1 @ TAIR |
+2 | 3e-163 | 354 | 168/177 (95%) | Symbols: RCA | rubisco activase | chr2:16570951-16573345 REVERSE LENGTH=474 |
| BRACH PP3 | Bradi4g09125.2.p | +2 | 0.0 | 365 | 171/178 (96%) | pacid=32783473 transcript=Bradi4g09125.2 locus=Bradi4g09125 ID=Bradi4g09125.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1154 bp)
>HORVU4Hr1G027260.10 1154 150831_barley_pseudomolecules ATAGCGAGTGAAGTCTGGAACTGCCCAAATGAAGGGCGTCGACCCCGACCATCTTCCTGG GCAAGAAGGTGAAGAACTACTACCATGGTGGCAACAAGATGAAGAGCAGGGTGGTGAGGG TCATGGCGGCCAAAAAGGAACTTGACCAGGGCAAGCAGACCGATGCGGACCGGTGGAAGG GTCTGGCCTACGACATCTCGGACGACCAGCAGGACATCACTCGGGGGAAAGGCATCGTGG ACTCCCTGTTCCAGGCCCCCATGGGCGACGGCACCCACGAGGCCATCCTAAGCTCCTACG AGTACATCAGCCAGGACTCCCCAACATCAAGGTTCCTCTCATCCTGGGTATCTGGGGAGG CAAGGGACAGGGCAAGTCGTTCCAGTGTGAGCTGGTGTTCGCCAAGATGGGCATCAACCC CATCATGATGAGCGCCGGTGAGCTGGAGAGCGGCAACGCCGGCGAGCCGGCCAAGCTGAT CCGGCAGAGGTACCGCGAGGCGGCCGACATTATCAACAAGGGCAAGATGTGCTGCCTCTT CATCAACGACCTGGACGCCGGCGCGGGCCGGATGGGCGGGACGACGCAGTACACGGTGAA CAACCAGATGGTGAACGCCACCCTGATGAACATCGCGGACGCGCCCACCAACGTGCAGCT CCCGGGGATGTACAACAAGGAGGAGAACCCCCGCGTGCCCATCATCGTCACCGGCAACGA CTTCTCGACGCTGTACGCTCCCCTGATCCGTGACGGGCGCATGGAGAAGTTCTACTGGGC GCCCACCCGCGAGGACCGCATCGGCGTGTGCAAGGGCATCTTCCGCACCGACAACGTCCC GGACGAGGCCTGATGACTTTTTCGGTGCTCTGCGTGCTCGGGTGTACGACGATGAGGTGC GCAAGTGGGTCGGCTCTACCGGAATCGAGAACATTGGCAAGAGGCTGGACAATGTCAAGC GTGTGCAGCTTGCTGACACCTACATGAGCCAGGCAGCTCTGGGTGATGCTAACCAGGATG CGATGAAGACTGGTTCCTTCTACGGTAAAGGAGCACAGCAAGGTACTTTGCCCGTGCCGG AAGGTTGCACCGACCAAAATGCCAAGAACTACGACCCAACGGCAAGGAGCGACGACGGCA GCTGCCTTTACACC