- Transcript HORVU3Hr1G110480.5
- Transcript IDHORVU3Hr1G110480.5
- Gene IDHORVU3Hr1G110480
Barley RTD
Exon Structure of HORVU3Hr1G110480.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 681733477 | 681733200 | - |
| chr3H | 2 | 681734115 | 681733967 | - |
| chr3H | 3 | 681734573 | 681734396 | - |
| chr3H | 4 | 681735055 | 681734894 | - |
| chr3H | 5 | 681735974 | 681735231 | - |
| chr3H | 6 | 681736144 | 681736050 | - |
| chr3H | 7 | 681736609 | 681736477 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g72880.1 | +1 | 5e-116 | 362 | 198/232 (85%) | protein|DNA mismatch repair protein Mlh1, putative, expressed |
| TAIR PP10 | AT4G09140 @ ARAPORT AT4G09140.1 @ TAIR |
+1 | 2e-84 | 278 | 151/233 (65%) | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:5817107-5821035 REVERSE LENGTH=737 |
| BRACH PP3 | Bradi2g61370.4.p | +1 | 4e-131 | 398 | 211/233 (91%) | pacid=32771968 transcript=Bradi2g61370.4 locus=Bradi2g61370 ID=Bradi2g61370.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1739 bp)
>HORVU3Hr1G110480.5 1739 150831_barley_pseudomolecules GAGAAAAATCTCAAAAGATTCCTGTGAGCCAAATTGTCAGAACAGATCCTCGCGATCCAT CTGGAAGGTTGCACACCTATTGGCAAGGTCAAACTTCAAATCTTGAAAAGAAGTCTGACC TTGTTGCCGTAAGAAATATTGTAAGATCAAGAAGGAATCCAAAAGATGCTGGTGATTTGT CCAGTCGCCATGAGCTTGTTACAGAAATAGATTCTAACTTACATCCTGGCCTTTTCGATA TTGTTAAGAATTGCACATATGTTGGAGTTGCGGATGAAGTTTTCGCTTTGATACAACACA ATACCCTCTTATACCTTGTCAATGTGGTAAATGTTAGGTAAACTCTATACAGTACATTGA TGACTAGTCATACTCTTCTATGCTTTGTATCTCTTATTTAAGCTAGATTTTTTCTTCTAA CATCTGACATAGTTATTTGAAGGTAACCGATACCCCAGTTACCTGTACATATTTGCAAAT GCACGCGCACACAAACAATATTGCTTGCACACACCACCATCAAACTGCTATCCATTCACA TCGCATCCAGTTGAACGCCTGCAACTGCTAAATAATAAGCACCTCTTCCAAATATTGCAT TGTTTTCTTTTCTGTACCACTCCCTCTGTTTCTAAATATAAGTCTTTTTAAAGATTTCAC TAGGGGACTACATACAGAGCAAAATGAGTGAATCTATACTCTAATATATGTATATATACA TCCGTATGTAGTTTTCTAGTGGAAATTCTAAAAAGACTTATATTTAGGAACGAAGGGAGT ATATGATATTGATGATTCAGCTTGTGATGCAGCAAAGAACTCATGTACCAACAAGCCTTG TGCCGTTTTGGGAACTTCAATGCTATAAAACTCAGTGAACCAGCTCCACTTCTGGAGTTG CTGAGAATGGCACTGAAAGATGACGAGTCAATGAGTGATGTAAATGAGAAGGAGAAACTA GAAATTGCAGAAGTGAACACTGAGATACTGAAAGAAAATGCTGAGATGATTAATGAGTAC TTCTCTATTCACATTGATCAAGGTGGCAACCTGACCAGACTTCCTGTTGTACTTGATCAG TACACTCCTGATATGGATCGCCTTCCAGAGTTCATGTTGAGTCTAGGAAATGATATTACC TGGGACGTTGAGAAAGAGTGCTTCAGAACGGCAGCAGCTGCTATCGGAAACTTCTATGCG CTTCATCCTCCCATCCTTCCAAATCCATCTGGCAAAGGCATTCAGTTATACAAGAAAAAT AAAGATTGCATGGGAAGTGCTGAACAGGCTGATAACAATTTACCAAGTACAGATGAAGAT GACATCGATCAAGAGCTGCTTGCGGAAGCAGAGGCAGCATGGGCTCAACGTGAGTGGACC ATCCAGCACGTCTTGTTCCCGTCGATGCGACTTTTCCTCAAGCCCCCTAAGTCGATGGCA ACTGATGGAACGTTTGTCCAGATTGCTTCTCTAGACAAGCTTTACAAGATCTTCGAGAGA TGCTAGCCGACAAGCGGCATGTCGAGAAGGAAGGGAAGAGCGCGACGCGACCGACGCCCT TGCCGGTTCCTTCCGGGACGTGTGTATATAATGCGGTGTCACTGTTTTTTCCCCCCTTTT TCCGATAGGGCTGTAAATATTTTTGAAGGACGAGCAAAGTTTGCTGGGCTCCAGCTCAGC CCTGGAATTGAATGGCAAATGCACGAATGATTTGGCTCTGCTACGCAATGCTGTCATTG